Hg_chrom6_TN10mRNA_11592
Organism: Heterodera glycines Gene Locus: chr6:2995196-2996372 Feature type: polypeptideProtein Sequence
Length: 184
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 1.39 | 1.285 | 0.562 | 1.902 | 1.533 | 0.453 | 1.902 | 0.604 | 1.395 | 1.318 | 1.279 | 0.906 | 0.732 | 1.109 | 0.621 | 0.802 | 0.494 | 2.09 | 1.279 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10933
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — |
0.803
|
0.297
|
0.000
|
— |
0.069
|
0.324
|
0.040
|
0.265
|
0.189
|
0.051
|
0.088
|
0.042
|
0.084
|
0.688
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000426
|
7.000
|
1.000
|
Hsc_gene_17706.t1
|
Hsc_gene_17676.t1;Hsc_gene_17684.t1;Hsc_gene_17706.t1
|
— |
Q28BT4.1 Calumenin [Xenopus tropicalis]
|
AVA09679.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.841|GO:0110165_0.839|GO:0005622_0.801|GO:0016020_0.763|GO:0043226_0.752|GO:0005737_0.737|GO:0043229_0.734|GO:0043227_0.700|GO:0043231_0.697|GO:0071944_0.637|GO:0008150_0.634|GO:0005886_0.628|GO:0005773_0.563|GO:0012505_0.555|GO:0003674_0.546|GO:0005488_0.533
|
IPR002048+80-115+|IPR011992+59-165+|IPR018247+93-105+
|
— | — |
G3DSA:1.10.238.10:FF:000104+50-183+calumenin_isoform_X1
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78
|
1.000
|
79-184
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
21981.540
|
5.375
|
-4.500
|
36.413
|
14.130
|
57.609
|
42.391
|
17.935
|
18.478
|
39.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
salmon
|
75.355
|
32.385
|
21.529
|
40.436
|
85.188
|
76.260
|
39.641
|
30.488
|
4.146
|
204.345
|
118.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.819
|
— |
1.020
|
1.041
|
— |
-0.934
|
-1.434
|
— | — | — |
5.040
|
— | — |