Hg_chrom6_TN10mRNA_11593
Organism: Heterodera glycines Gene Locus: chr6:3020788-3021479 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 0.916 | 0.716 | 0.543 | 0.131 | 1.009 | 0.469 | 0.787 | 1.225 | 2.767 | 0.239 | 2.316 | 2.187 | 1.211 | 0.161 | 0.562 | 0.904 | 1.312 | 1.817 | 2.316 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10934
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.233
|
0.254
|
0.013
|
0.208
|
0.778
|
0.482
|
0.495
|
0.015
|
0.099
|
0.182
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q6BWH8.1 Protein YOP1 [Debaryomyces hansenii CBS767]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
KAK8465739
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.876|GO:0005575_0.711|GO:0110165_0.711|GO:0016020_0.630|GO:0005886_0.623|GO:0071944_0.623|GO:0009987_0.571|GO:0005622_0.556|GO:0005737_0.556|GO:0005773_0.556|GO:0043226_0.556|GO:0043227_0.556|GO:0043229_0.556|GO:0043231_0.556|GO:0050896_0.538|GO:0012505_0.524
|
IPR004345+48-120_51-121+
|
— |
PF03134+51-121+TB2/DP1,_HVA22_family
|
— |
PTHR12300+48-120+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
14672.560
|
4.663
|
-2.000
|
8.661
|
19.685
|
25.984
|
74.016
|
3.937
|
4.724
|
43.307
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
163.266
|
12.763
|
74.416
|
143.018
|
133.840
|
303.730
|
196.359
|
330.658
|
55.008
|
224.988
|
152.139
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.308
|
3.348
|
1.056
|
— |
1.198
|
-0.620
|
— |
-0.605
|
— | — | — | — | — |
No JSON data available for plots.