Hg_chrom6_TN10mRNA_11594
Organism: Heterodera glycines Gene Locus: chr6:3022121-3033640 Feature type: polypeptideProtein Sequence
Length: 1,011
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.288 | 0.805 | 0.755 | 0.443 | 1.137 | 0.862 | 0.966 | 1.533 | 0.923 | 1.096 | 0.809 | 1.047 | 0.989 | 0.989 | 0.828 | 1.385 | 1.054 | 1.019 | 0.913 | 0.727 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10935
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.220
|
0.446
|
0.092
|
0.486
|
0.276
|
0.356
|
0.435
|
0.070
|
0.609
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010265
|
1.000
|
1.000
|
Hsc_gene_25594.t1
|
Hsc_gene_25593.t1;Hsc_gene_25594.t1
|
— |
Q03606.3 CRAL-TRIO domain-containing protein T23G5.2 [Caenorhabditis elegans]
|
KAI1732201.1 PRELI-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.800|GO:0110165_0.787|GO:0016020_0.664|GO:0008150_0.637|GO:0005622_0.572|GO:0043226_0.540|GO:0009987_0.513
|
IPR001251+440-611_440-614_443-608_446-608+|IPR006797+2-175_17-171+|IPR011074+393-417_397-422+|IPR036273+357-438+|IPR036598+650-833+|IPR036865+365-635_443-617+|IPR051064+60-836+
|
SM00516+440-611+|SM01100+397-422+
|
PF00650+446-608+CRAL/TRIO_domain|PF03765+393-417+CRAL/TRIO,_N-terminal_domain|PF04707+17-171+PRELI-like_family
|
— |
PTHR23324+60-836+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
186-331;839-1011
|
2.000
|
1-185;332-838
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
108569.260
|
6.482
|
-0.500
|
23.442
|
10.287
|
46.390
|
53.610
|
12.463
|
10.979
|
56.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
2118.427
|
2204.406
|
2215.597
|
2454.231
|
3068.405
|
2784.056
|
2925.697
|
1783.430
|
601.013
|
2278.924
|
1559.819
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.222
|
— |
0.256
|
0.290
|
— | — |
-0.749
|
0.857
|
— | — | — | — | — |
No JSON data available for plots.