Hg_chrom6_TN10mRNA_11596
Organism: Heterodera glycines Gene Locus: chr6:3047170-3052326 Feature type: polypeptideProtein Sequence
Length: 339
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 1.441 | 1.234 | 0.61 | 1.18 | 0.681 | 0.878 | 2.212 | 1.114 | 1.236 | 1.475 | 1.215 | 1.147 | 0.511 | 0.722 | 1.559 | 0.435 | 0.76 | 0.681 | 0.26 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10937
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KPKSGKKRRRRRD
|
— | — | — | — |
1-20
|
0.988
|
1.000
|
1.000
|
1.000
|
0.334
|
0.112
|
0.018
|
0.203
|
0.465
|
0.426
|
0.323
|
0.090
|
0.548
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010266
|
1.000
|
1.000
|
Hsc_gene_25601.t1
|
— | — | — |
KAI3407698.1 hypothetical protein GPALN_014352 [Globodera pallida]
|
KAI4138238
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
285-339
|
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
37375.100
|
7.182
|
5.500
|
31.563
|
10.324
|
53.982
|
46.018
|
17.699
|
13.864
|
50.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1530.454
|
2.381
|
448.403
|
1226.545
|
70.396
|
7.744
|
8.096
|
4.885
|
7466.347
|
432.807
|
3447.181
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.333
|
8.877
|
1.561
|
-4.157
|
-3.167
|
— | — | — |
3.994
|
-2.439
|
— | — | — |