Hg_chrom6_TN10mRNA_11598
Organism: Heterodera glycines Gene Locus: chr6:3063622-3069731 Feature type: polypeptideProtein Sequence
Length: 293
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 0.952 | 0.558 | 1.177 | 0.683 | 0.35 | 1.016 | 0.171 | 0.834 | 0.969 | 0.259 | 1.205 | 1.043 | 0.591 | 0.139 | 3.023 | 2.294 | 0.879 | 1.313 | 0.903 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10939
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_25603
|
— |
Hg_chrom6_TN10mRNA_11598
|
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
31-68
|
0.835
|
1-18
|
0.997
|
1.000
|
0.000
|
0.000
|
0.114
|
0.049
|
0.003
|
0.412
|
0.214
|
0.056
|
0.278
|
0.013
|
0.098
|
0.941
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002298
|
1.000
|
3.000
|
Hsc_gene_25603.t1;Hsc_gene_25603.t2;Hsc_gene_25603.t3
|
Hsc_gene_25603.t1;Hsc_gene_25603.t2;Hsc_gene_25603.t3
|
— | — |
QIO03924.1 expansin [Pratylenchus penetrans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975|GO:0030246|GO:0030247
|
GO:0008150_0.953|GO:0005575_0.939|GO:0110165_0.927|GO:0065007_0.893|GO:0050789_0.875|GO:0003674_0.812|GO:0005488_0.783|GO:0005515_0.772|GO:0048519_0.747|GO:0008152_0.743|GO:0019222_0.743|GO:0043170_0.732|GO:0060255_0.732|GO:0044238_0.730|GO:0080090_0.730|GO:0019538_0.705|GO:0065009_0.696|GO:0003824_0.693|GO:0050790_0.693|GO:0009892_0.692|GO:0051246_0.689|GO:0010605_0.686|GO:0006508_0.682|GO:0019899_0.680|GO:0098772_0.680|GO:0044092_0.679|GO:0043086_0.678|GO:0051248_0.678|GO:0016787_0.677|GO:0051336_0.677|GO:0030162_0.673|GO:0140096_0.671|GO:0008233_0.670|GO:0010466_0.670|GO:0045861_0.670|GO:0051346_0.670|GO:0052547_0.670|GO:0030234_0.664|GO:0004857_0.655|GO:0140678_0.655|GO:0002020_0.650|GO:0004866_0.650|GO:0004867_0.650|GO:0004869_0.650|GO:0030414_0.650|GO:0061134_0.650|GO:0061135_0.650|GO:0005576_0.633|GO:0005615_0.582
|
IPR001919+13-119_20-116_21-107+|IPR008965+17-109+|IPR009009+228-273+|IPR012291+18-120+|IPR019028+20-96+|IPR036908+174-281_175-289+|IPR051477+158-272+
|
SM00637+20-116+|SM01063+20-96+
|
PF00553+21-107+Cellulose_binding_domain|PF03330+228-273+Lytic_transglycolase
|
— |
PTHR31836+158-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
30056.000
|
3.833
|
-13.500
|
9.898
|
8.874
|
50.512
|
49.488
|
2.730
|
7.167
|
70.307
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1791.229
|
10.554
|
719.432
|
117.151
|
24.081
|
66.922
|
37.713
|
3661.062
|
6588.807
|
1156.181
|
3484.449
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.860
|
3.334
|
-2.509
|
-2.311
|
1.485
|
-0.818
|
5.681
|
-6.464
|
— |
-5.643
|
-5.238
|
— | — |