Hg_chrom6_TN10mRNA_11600
Organism: Heterodera glycines Gene Locus: chr6:3078793-3085299 Feature type: polypeptideProtein Sequence
Length: 1,197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 1.574 | 0.987 | 0.605 | 1.267 | 1.499 | 0.587 | 0.501 | 1.504 | 1.152 | 1.418 | 1.769 | 1.416 | 0.594 | 0.716 | 1.241 | 0.931 | 0.595 | 0.643 | 0.663 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10941
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom6_TN10mRNA_11600
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KVKK,KMRRKSSFGAKRGKNTRK,KKENIIQENSSDHCKKDQK,KRCMEQSAVALLDSVKMRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.542
|
0.107
|
0.007
|
0.681
|
0.075
|
0.101
|
0.149
|
0.043
|
0.149
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010268
|
1.000
|
1.000
|
Hsc_gene_25608.t1
|
Hsc_gene_25608.t1
|
— |
Q9BWT3.2 Poly(A) polymerase gamma [Homo sapiens]
|
KAI5090768.1 poly(A) polymerase alpha, partial [Silurus meridionalis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.747|GO:0110165_0.747|GO:0005622_0.696|GO:0016020_0.657|GO:0043226_0.624|GO:0043229_0.602|GO:0008150_0.587|GO:0043227_0.562|GO:0043231_0.541|GO:0003674_0.516
|
IPR007012+917-1055+|IPR043519+729-889_766-906+|IPR048840+791-910+
|
— |
PF04928+917-1055+Poly(A)_polymerase_central_domain|PF20750+791-910+Poly(A)_polymerase_nucleotidyltransferase_domain
|
— |
PTHR10682+725-1147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-418
|
2.000
|
1-84;419-1197
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
135460.070
|
7.017
|
4.000
|
26.901
|
9.190
|
53.885
|
46.115
|
13.868
|
13.033
|
46.199
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
258.959
|
4.438
|
39.784
|
103.551
|
34.313
|
7.050
|
19.171
|
5.265
|
554.427
|
637.037
|
601.633
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.934
|
4.407
|
1.491
|
-1.625
|
-2.268
|
1.453
|
— |
2.009
|
— |
-2.254
|
— | — | — |
No JSON data available for plots.