Hg_chrom6_TN10mRNA_11605
Organism: Heterodera glycines Gene Locus: chr6:3095066-3098400 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.274 | 0.249 | 0.827 | 0.457 | 0.702 | 0.815 | 0.514 | 2.588 | 1.62 | 0.623 | 0.806 | 2.378 | 0.461 | 0.349 | 1.272 | 0.898 | 1.193 | 0.527 | 1.41 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10945
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
50-70
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.132
|
0.061
|
0.027
|
0.076
|
0.363
|
0.110
|
0.122
|
0.017
|
0.835
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000318
|
7.000
|
2.000
|
Hsc_gene_24688.t1;Hsc_gene_8165.t1
|
— | — | — |
KAI1715748.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.944|GO:0009987_0.888|GO:0050896_0.775|GO:0009628_0.698|GO:0009605_0.694|GO:0051606_0.692|GO:0009314_0.677|GO:0009416_0.677|GO:0009581_0.676|GO:0009582_0.676|GO:0009583_0.670|GO:0016037_0.670|GO:0016038_0.670
|
IPR000276+36-274+|IPR017452+42-292+|IPR019424+37-206+|IPR047130+32-279+
|
SM01381+36-274+
|
PF10320+37-206+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+32-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-292
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
32100.930
|
8.542
|
6.500
|
10.959
|
15.068
|
33.562
|
66.438
|
6.849
|
4.110
|
48.630
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
13.181
|
2.926
|
6.777
|
1.303
|
2.223
|
1.356
|
1.629
|
0.839
|
0.000
|
51.273
|
29.299
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-2.265
|
— | — | — | — | — |
-6.419
|
— |
-3.972
|
— | — |
No JSON data available for plots.