Hg_chrom6_TN10mRNA_11610
Organism: Heterodera glycines Gene Locus: chr6:3127006-3128275 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.211 | 2.537 | 0.661 | 1.567 | 1.515 | 2.098 | 0.649 | 2.273 | 1.01 | 0.983 | 0.964 | 0.535 | 1.263 | 2.098 | 1.299 | 1.039 | 0.0 | 0.138 | 0.699 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10950
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.391
|
0.322
|
0.021
|
0.677
|
0.246
|
0.054
|
0.144
|
0.078
|
0.100
|
0.240
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004322
|
2.000
|
1.000
|
Hsc_gene_25618.t1
|
— | — |
Q9M0C3.1 RING-H2 finger protein ATL14 [Arabidopsis thaliana]
|
KAJ7954642.1 putative Ring finger protein [Quillaja saponaria]
|
XP_012458414
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.877|GO:0005575_0.644|GO:0009987_0.642|GO:0110165_0.635|GO:0008152_0.590|GO:0003674_0.580|GO:0043170_0.576|GO:0005622_0.526|GO:0044238_0.511|GO:0016020_0.505
|
IPR001841+52-77_54-77+|IPR013083+31-86+
|
— |
PF13639+52-77+Ring_finger_domain
|
— |
PTHR46539+53-85+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-57
|
1.000
|
58-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.955
|
12780.220
|
7.301
|
2.500
|
30.000
|
11.818
|
56.364
|
43.636
|
17.273
|
12.727
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
140.229
|
3.747
|
36.511
|
77.316
|
33.865
|
13.249
|
9.322
|
24.316
|
64.968
|
490.405
|
308.075
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.056
|
4.229
|
1.190
|
-1.227
|
-1.337
|
— |
0.775
|
-1.246
|
— | — | — | — | — |
No JSON data available for plots.