Hg_chrom6_TN10mRNA_11611
Organism: Heterodera glycines Gene Locus: chr6:3127243-3128274 Feature type: polypeptideProtein Sequence
Length: 119
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.293 | 2.345 | 0.611 | 1.449 | 1.261 | 2.37 | 0.5 | 2.101 | 1.681 | 0.795 | 0.891 | 0.494 | 1.401 | 1.939 | 1.2 | 1.2 | 0.138 | 0.509 | 0.646 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10950
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-16
|
0.994
|
1.000
|
0.000
|
0.000
|
0.352
|
0.341
|
0.022
|
0.673
|
0.232
|
0.071
|
0.204
|
0.072
|
0.115
|
0.210
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004322
|
2.000
|
1.000
|
Hsc_gene_25618.t1
|
— | — |
Q9M0C3.1 RING-H2 finger protein ATL14 [Arabidopsis thaliana]
|
KAJ7954642.1 putative Ring finger protein [Quillaja saponaria]
|
XP_012458414
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.880|GO:0005575_0.627|GO:0009987_0.619|GO:0110165_0.618|GO:0008152_0.589|GO:0003674_0.579|GO:0043170_0.578|GO:0016020_0.519|GO:0044238_0.510
|
IPR001841+61-86_63-86+|IPR013083+8-94+
|
— |
PF13639+61-86+Ring_finger_domain
|
— |
PTHR46539+62-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66
|
1.000
|
67-119
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
13654.350
|
7.699
|
3.500
|
26.891
|
10.084
|
55.462
|
44.538
|
15.966
|
10.924
|
47.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
140.229
|
3.747
|
36.511
|
77.316
|
33.865
|
13.249
|
9.322
|
24.316
|
64.968
|
490.405
|
308.075
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.056
|
4.229
|
1.190
|
-1.227
|
-1.337
|
— |
0.775
|
-1.246
|
— | — | — | — | — |