Hg_chrom6_TN10mRNA_11614
Organism: Heterodera glycines Gene Locus: chr6:3140768-3146278 Feature type: polypeptideProtein Sequence
Length: 609
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.604 | 0.657 | 0.057 | 0.876 | 4.295 | 0.606 | 0.903 | 0.876 | 0.71 | 0.448 | 2.125 | 1.642 | 2.684 | 0.972 | 0.821 | 0.431 | 0.547 | 0.758 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10953
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — |
32-63
|
0.986
|
— | — |
0.000
|
— | — |
0.257
|
0.044
|
0.015
|
0.233
|
0.342
|
0.326
|
0.671
|
0.013
|
0.245
|
0.347
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001247
|
2.000
|
3.000
|
Hsc_gene_25619.t1;Hsc_gene_25619.t2;Hsc_gene_25619.t3
|
Hsc_gene_22364.t1;Hsc_gene_25619.t1;Hsc_gene_25619.t2;Hsc_gene_25619.t3
|
— | — |
KAI1707725.1 Prion-like-(Q/N-rich)-domain-bearing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51;143-609
|
1.000
|
52-142
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
69201.350
|
6.295
|
-1.500
|
18.391
|
9.852
|
50.411
|
49.589
|
9.524
|
8.867
|
47.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
tan
|
5872.032
|
5177.839
|
19070.707
|
5717.248
|
6480.269
|
14837.678
|
3943.069
|
7905.514
|
2312.566
|
281.094
|
1151.725
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.655
|
— |
-1.632
|
0.149
|
1.211
|
-1.904
|
-1.014
|
-0.863
|
2.954
|
— |
4.826
|
— | — |
No JSON data available for plots.