Hg_chrom6_TN10mRNA_11619
Organism: Heterodera glycines Gene Locus: chr6:3174307-3175224 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.034 | 0.505 | 0.766 | 0.833 | 0.997 | 0.331 | 0.833 | 0.988 | 2.327 | 0.926 | 2.614 | 1.235 | 0.748 | 0.34 | 1.111 | 1.184 | 1.178 | 1.282 | 1.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10958
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RKWIAMTNVLDKMKKM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.285
|
0.205
|
0.028
|
0.172
|
0.929
|
0.284
|
0.597
|
0.023
|
0.164
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001231
|
3.000
|
2.000
|
Hsc_gene_16970.t1;Hsc_gene_3151.t1
|
Hsc_gene_16970.t1;Hsc_gene_25627.t1;Hsc_gene_2903.t1;Hsc_gene_3151.t1
|
— |
Q6FMU3.1 Protein YOP1 [Nakaseomyces glabratus CBS 138]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.862|GO:0005575_0.735|GO:0110165_0.735|GO:0016020_0.634|GO:0005886_0.616|GO:0071944_0.616|GO:0005622_0.574|GO:0005737_0.572|GO:0050896_0.547|GO:0005773_0.542|GO:0043226_0.542|GO:0043227_0.542|GO:0043229_0.542|GO:0043231_0.542|GO:0012505_0.529|GO:0009987_0.514
|
IPR004345+86-168_89-165+
|
— |
PF03134+89-165+TB2/DP1,_HVA22_family
|
— |
PTHR12300+86-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
20624.370
|
7.184
|
1.500
|
17.222
|
13.333
|
40.556
|
59.444
|
9.444
|
7.778
|
43.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
633.683
|
3.486
|
5.213
|
18.360
|
80.869
|
777.234
|
27.790
|
952.875
|
1.028
|
2071.905
|
1184.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.254
|
1.938
|
2.107
|
3.280
|
-4.795
|
— |
-4.952
|
-10.786
|
4.060
|
-4.532
|
— | — |
No JSON data available for plots.