Hg_chrom6_TN10mRNA_11620
Organism: Heterodera glycines Gene Locus: chr6:3179187-3179659 Feature type: polypeptideProtein Sequence
Length: 93
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.75 | 1.173 | 0.0 | 0.717 | 1.103 | 1.792 | 1.613 | 0.478 | 1.162 | 1.14 | 0.633 | 0.0 | 1.241 | 0.878 | 0.768 | 0.705 | 0.815 | 4.136 | 0.316 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10959
|
— | — |
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
4.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_15762;Hsc_gene_15757;Hsc_gene_15826
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.297
|
0.309
|
0.021
|
0.150
|
0.091
|
0.043
|
0.072
|
0.058
|
0.100
|
0.592
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010276
|
1.000
|
1.000
|
Hsc_gene_15825.t3
|
Hsc_gene_15765.t1;Hsc_gene_15823.t1;Hsc_gene_15824.t1;Hsc_gene_15825.t1;Hsc_gene_15825.t2;Hsc_gene_15825.t3;Hsc_gene_15826.t1
|
— | — |
AAO33475.1 gland-specific protein g5d08 [Heterodera glycines]
|
No
|
0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-93
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.970
|
10041.130
|
8.659
|
2.500
|
25.806
|
9.677
|
47.312
|
52.688
|
15.054
|
10.753
|
58.065
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
111.361
|
0.307
|
3.969
|
2.527
|
2.675
|
15.561
|
3.766
|
664.842
|
0.000
|
227.085
|
129.763
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.450
|
2.910
|
— | — |
2.560
|
-2.029
|
5.318
|
-7.322
|
-8.638
|
— | — | — | — |
No JSON data available for plots.