Hg_chrom6_TN10mRNA_11623
Organism: Heterodera glycines Gene Locus: chr6:3196377-3199007 Feature type: polypeptideProtein Sequence
Length: 279
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 0.834 | 0.456 | 0.247 | 0.956 | 0.735 | 1.067 | 0.358 | 1.752 | 0.92 | 1.521 | 1.265 | 0.796 | 0.207 | 2.706 | 0.819 | 1.88 | 1.303 | 0.0 | 0.105 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10962
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
4.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRGTTVIRRGTTAIRRVIR,KRGTTVNRRGTTVIKRGTK,RRGTTVIKRGTKVIKRGTK,VIKRGTKVIKRGTKVIKRGTTVIKRGTKVIKRGTTVIKRGTKVIKSDRKVIRRGATVNRRGTTVKK
|
— | — | — | — |
1-24
|
0.716
|
1.000
|
0.000
|
0.000
|
0.661
|
0.107
|
0.026
|
0.471
|
0.042
|
0.031
|
0.034
|
0.036
|
0.101
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010278
|
1.000
|
1.000
|
Hsc_gene_11267.t1
|
— | — | — | — |
MCQ2536916
|
0.750
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
166-279
|
1.000
|
1-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
31320.690
|
12.139
|
43.000
|
32.258
|
3.943
|
55.914
|
44.086
|
24.014
|
8.244
|
47.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
176.867
|
0.624
|
18.794
|
14.971
|
5.048
|
4.532
|
0.611
|
1.374
|
156.450
|
639.222
|
432.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.703
|
4.467
|
— |
-1.602
|
— |
-2.885
|
-1.828
|
— | — |
-3.228
|
-6.499
|
— | — |