Hg_chrom6_TN10mRNA_11626
Organism: Heterodera glycines Gene Locus: chr6:3207190-3212065 Feature type: polypeptideProtein Sequence
Length: 286
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 1.545 | 0.509 | 1.326 | 1.515 | 1.166 | 0.874 | 0.874 | 0.855 | 1.134 | 0.954 | 2.262 | 1.166 | 1.076 | 0.928 | 0.899 | 0.802 | 0.795 | 1.883 | 0.926 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10965
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.836
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.673
|
0.116
|
0.011
|
0.476
|
0.183
|
0.077
|
0.046
|
0.021
|
0.136
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010280
|
1.000
|
1.000
|
Hsc_gene_11257.t1
|
Hsc_gene_11257.t1
|
— |
F4HYD7.1 Ran-binding protein M homolog [Arabidopsis thaliana]
|
KAI3417080.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.743|GO:0005575_0.680|GO:0110165_0.680|GO:0005622_0.591|GO:0009987_0.549|GO:0005737_0.532
|
IPR001870+76-271+|IPR003877+139-270_142-267+|IPR013320+98-272+|IPR043136+77-283+|IPR044736+129-267+|IPR050618+33-275+
|
SM00449+139-270+
|
PF00622+142-267+SPRY_domain
|
— |
PTHR12864+33-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-93
|
1.000
|
94-286
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
32517.100
|
6.338
|
-0.500
|
24.476
|
11.538
|
46.853
|
53.147
|
12.587
|
11.888
|
47.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
462.837
|
87.000
|
177.503
|
145.173
|
202.581
|
158.189
|
452.570
|
102.348
|
123.409
|
1435.346
|
873.087
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
0.601
|
— |
0.449
|
-0.343
|
1.528
|
-0.735
|
2.288
|
-3.614
|
— | — | — | — |
No JSON data available for plots.