Hg_chrom6_TN10mRNA_11628
Organism: Heterodera glycines Gene Locus: chr6:3221737-3223261 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.134 | 0.851 | 1.109 | 0.421 | 1.558 | 0.834 | 0.436 | 0.61 | 1.265 | 1.318 | 0.985 | 3.109 | 0.565 | 0.704 | 1.244 | 0.755 | 1.133 | 0.985 | 0.625 | 0.956 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10967
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRFDDMVEAMKKLIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.464
|
0.262
|
0.025
|
0.740
|
0.071
|
0.151
|
0.143
|
0.009
|
0.149
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010281
|
1.000
|
1.000
|
Hsc_gene_11254.t1
|
Hsc_gene_11254.t1;Hsc_gene_15083.t1;Hsc_gene_23075.t1;Hsc_gene_23077.t1;Hsc_gene_23549.t1;Hsc_gene_23571.t1;Hsc_gene_25452.t1;Hsc_gene_25452.t2;Hsc_gene_3007.t1;Hsc_gene_8994.t1
|
— |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
APO36911.1 14-3-3 protein [Meloidogyne incognita]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.875|GO:0005575_0.856|GO:0110165_0.854|GO:0003674_0.764|GO:0009987_0.763|GO:0005622_0.725|GO:0005488_0.713|GO:0005515_0.651|GO:0043226_0.646|GO:0065007_0.638|GO:0016020_0.635|GO:0005737_0.623|GO:0050789_0.602|GO:0051179_0.562|GO:0050794_0.556|GO:0043227_0.542
|
IPR000308+2-246_9-238_40-69_89-113_120-142_155-181_182-208_209-238+|IPR023410+8-245_17-236+|IPR036815+1-245_9-237+
|
SM00101+8-245+
|
PF00244+17-236+14-3-3_protein
|
— |
PTHR18860+9-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
229-246
|
1.000
|
1-228
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
27830.030
|
4.954
|
-5.500
|
29.268
|
7.317
|
48.374
|
51.626
|
13.821
|
15.447
|
46.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1382.208
|
58.631
|
50.777
|
86.561
|
267.526
|
5449.612
|
71.410
|
6639.430
|
54.049
|
1272.644
|
750.389
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.439
|
0.425
|
0.880
|
1.597
|
4.363
|
-6.245
|
— |
-6.393
|
— | — | — | — | — |
No JSON data available for plots.