Hg_chrom6_TN10mRNA_11639
Organism: Heterodera glycines Gene Locus: chr6:3267292-3271475 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 0.694 | 0.868 | 0.721 | 0.448 | 1.76 | 1.244 | 1.045 | 0.73 | 1.049 | 0.498 | 2.458 | 0.912 | 1.263 | 1.462 | 0.981 | 1.615 | 0.905 | 0.918 | 0.439 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10976
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.708
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.489
|
0.505
|
0.215
|
0.611
|
0.381
|
0.269
|
0.327
|
0.039
|
0.243
|
0.358
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_5382.t1
|
— |
Q22943.2 Platelet-activating factor acetylhydrolase homolog 2 [Caenorhabditis elegans]
|
KAI6191544.1 1-alkyl-2-acetylglycerophosphocholine esterase [Aphelenchoides bicaudatus]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0003674_0.874|GO:0032501_0.804|GO:0032502_0.788|GO:0048856_0.788|GO:0007275_0.776|GO:0008152_0.776|GO:0044238_0.768|GO:0009888_0.708|GO:0009653_0.703|GO:0009056_0.699|GO:0003824_0.697|GO:0009790_0.691|GO:0060429_0.689|GO:0002009_0.681|GO:0048729_0.681|GO:0016787_0.680|GO:0006629_0.679|GO:0048598_0.679|GO:0016042_0.675|GO:0016331_0.670|GO:0016788_0.661|GO:0052689_0.654|GO:0003847_0.650
|
IPR029058+1-279+
|
— |
PF03403+5-272+Platelet-activating_factor_acetylhydrolase,_isoform_II
|
— |
PTHR10272+4-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
182-230;297-335
|
2.000
|
1-181;231-296
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
36314.350
|
9.730
|
13.500
|
20.000
|
8.060
|
46.567
|
53.433
|
12.537
|
7.463
|
56.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
222.066
|
19.960
|
29.585
|
74.130
|
176.921
|
495.300
|
158.857
|
318.081
|
0.000
|
494.225
|
282.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.756
|
1.438
|
1.225
|
1.498
|
-1.629
|
-0.753
|
-0.854
|
-9.761
|
7.069
|
— | — | — |
No JSON data available for plots.