Hg_chrom6_TN10mRNA_11645
Organism: Heterodera glycines Gene Locus: chr6:3299257-3303841 Feature type: polypeptideProtein Sequence
Length: 545
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.896 | 1.579 | 0.601 | 0.253 | 2.599 | 1.741 | 0.459 | 1.009 | 1.264 | 0.868 | 2.113 | 1.835 | 0.765 | 0.212 | 1.011 | 0.655 | 0.632 | 0.778 | 0.141 | 0.432 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10982
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RRENFRKEHHQKKGLR,KKAEAALKKAEEKRKQL,KRKQLEAEVEKEKKRDE,RKELIAVEVEDLVKKKET,KKAQAEQNSNGKKKLHRR,KKAEEKRKQLEAEVEKEKK,KEKAEAALKKAEAALKKAEEKRKQ
|
— | — | — | — |
1-25
|
0.865
|
1.000
|
0.000
|
0.000
|
0.488
|
0.215
|
0.005
|
0.665
|
0.085
|
0.127
|
0.172
|
0.035
|
0.436
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004326
|
1.000
|
2.000
|
Hsc_gene_11269.t1;Hsc_gene_11269.t2
|
Hsc_gene_11269.t2
|
— | — | — |
KAI9242952
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
82-239;416-545
|
2.000
|
1-81;240-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
63146.540
|
7.532
|
5.500
|
39.817
|
6.422
|
61.835
|
38.165
|
20.917
|
18.899
|
37.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
4568.330
|
4.736
|
1018.407
|
1232.286
|
116.870
|
1.749
|
5.268
|
31.911
|
24451.431
|
743.660
|
10904.133
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.519
|
7.884
|
0.383
|
-3.430
|
-6.045
|
— |
4.110
|
-2.470
|
4.945
|
-4.158
|
— | — | — |