Hg_chrom6_TN10mRNA_11646
Organism: Heterodera glycines Gene Locus: chr6:3304858-3305718 Feature type: polypeptideProtein Sequence
Length: 185
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.32 | 1.131 | 0.491 | 1.864 | 0.631 | 1.247 | 0.965 | 1.351 | 1.321 | 0.95 | 0.573 | 1.59 | 0.901 | 0.832 | 0.221 | 2.317 | 0.532 | 1.147 | 0.416 | 0.159 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10983
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
24A12|AF500034.1#tn8jg7956.t1
|
11A06|AF5000151#TN10pacbiomikadoChromosome_6G9722
|
Hsc_gene_11262;Hsc_gene_11271
|
— | — |
24-Not_Clustered
|
0.721
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— | — | — | — | — |
1-25
|
0.994
|
1.000
|
0.000
|
0.000
|
0.614
|
0.401
|
0.012
|
0.276
|
0.092
|
0.078
|
0.092
|
0.041
|
0.260
|
0.287
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010286
|
1.000
|
1.000
|
Hsc_gene_11271.t1
|
Hsc_gene_11261.t1;Hsc_gene_11262.t1;Hsc_gene_11271.t1;Hsc_gene_11272.t1
|
— | — |
AAN32886.1 gland-specific protein G2D01 [Heterodera glycines]
|
MBR2282419
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
165-185
|
1.000
|
1-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
18940.500
|
6.303
|
-0.500
|
14.054
|
7.027
|
43.243
|
56.757
|
7.568
|
6.486
|
63.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
7289.804
|
2.381
|
5.682
|
128.263
|
2205.266
|
344.947
|
862.438
|
85.674
|
164.370
|
30406.620
|
17445.656
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.619
|
4.602
|
4.072
|
-2.661
|
1.333
|
-2.124
|
3.478
|
-7.626
|
— |
-3.624
|
— | — |