Hg_chrom6_TN10mRNA_11650
Organism: Heterodera glycines Gene Locus: chr6:3317205-3321657 Feature type: polypeptideProtein Sequence
Length: 393
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 0.888 | 1.203 | 1.053 | 0.806 | 0.587 | 0.303 | 1.781 | 0.735 | 1.169 | 1.157 | 1.497 | 2.12 | 1.419 | 1.142 | 0.654 | 1.168 | 1.002 | 1.957 | 1.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10986
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KKMPPPPIKKKK
|
8-79
|
0.709
|
— | — | — | — |
0.000
|
— | — |
0.094
|
0.044
|
0.003
|
0.145
|
0.203
|
0.225
|
0.839
|
0.009
|
0.163
|
0.419
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010287
|
1.000
|
1.000
|
Hsc_gene_11275.t1
|
Hsc_gene_11275.t1
|
— |
P83088.4 Alpha-(1,3)-fucosyltransferase C [Drosophila melanogaster]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.877|GO:0003674_0.833|GO:0003824_0.748|GO:0016740_0.661|GO:0005575_0.646|GO:0110165_0.646|GO:0008152_0.630|GO:0016757_0.615|GO:0016758_0.614|GO:0008417_0.605|GO:0009987_0.589|GO:0016020_0.541|GO:0005622_0.529|GO:0005737_0.504
|
IPR001503+50-381_198-361+|IPR031481+53-172+|IPR038577+138-346+
|
— |
PF00852+198-361+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+53-172+Fucosyltransferase,_N-terminal
|
G3DSA:3.40.50.11660:FF:000002+135-341+Alpha-(1,3)-fucosyltransferase
|
PTHR48350+50-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-393
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
46396.530
|
8.458
|
14.000
|
28.244
|
18.321
|
46.056
|
53.944
|
16.794
|
11.450
|
46.819
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
589.077
|
40.986
|
278.129
|
168.592
|
49.335
|
654.897
|
368.166
|
230.064
|
1298.324
|
932.157
|
1089.086
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.534
|
1.903
|
-0.615
|
-1.806
|
3.746
|
-0.821
|
-1.607
|
0.818
|
— |
-2.785
|
-3.932
|
— | — |
No JSON data available for plots.