Hg_chrom6_TN10mRNA_11653
Organism: Heterodera glycines Gene Locus: chr6:3329190-3331893 Feature type: polypeptideProtein Sequence
Length: 398
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.519 | 0.76 | 0.685 | 1.3 | 1.424 | 1.417 | 0.957 | 1.508 | 0.782 | 1.29 | 0.457 | 1.035 | 0.838 | 0.58 | 1.384 | 0.933 | 0.7 | 0.99 | 1.353 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10989
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.572
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.524
|
0.451
|
0.094
|
0.774
|
0.059
|
0.122
|
0.068
|
0.066
|
0.083
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003857
|
2.000
|
1.000
|
Hsc_gene_12386.t1
|
Hsc_gene_12386.t1
|
— |
Q5XIG6.1 N-acetylgalactosamine kinase [Rattus norvegicus]
|
KAI1724804.1 galactokinase galactose-binding signature domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004335|GO:0005524|GO:0005737|GO:0006012|GO:0016301|GO:0016773|GO:0046835
|
GO:0008150_0.949|GO:0009987_0.841|GO:0008152_0.787|GO:0044238_0.761|GO:0044237_0.724|GO:0005575_0.693|GO:0003674_0.688|GO:0110165_0.687|GO:0005975_0.614|GO:0005622_0.594|GO:0006793_0.569|GO:0006796_0.568|GO:0003824_0.551|GO:0005737_0.540|GO:0044281_0.508|GO:0016740_0.503
|
IPR000705+85-103_320-334+|IPR006203+94-105+|IPR006204+87-164+|IPR006206+1-398+|IPR013750+347-393+|IPR014721+1-186+|IPR020568+1-190+|IPR036554+192-393+
|
— |
PF00288+87-164+GHMP_kinases_N_terminal_domain|PF08544+347-393+GHMP_kinases_C_terminal
|
— |
PTHR10457+1-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-398
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
43319.980
|
5.934
|
-4.000
|
25.126
|
9.045
|
44.724
|
55.276
|
12.814
|
12.312
|
52.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
79.007
|
2.734
|
25.389
|
41.619
|
68.592
|
83.838
|
68.112
|
83.871
|
81.197
|
144.448
|
117.341
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.979
|
3.783
|
0.823
|
0.689
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.