Hg_chrom6_TN10mRNA_11657
Organism: Heterodera glycines Gene Locus: chr6:3335452-3338564 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.512 | 0.45 | 0.641 | 0.31 | 0.953 | 0.295 | 0.774 | 2.546 | 2.05 | 0.938 | 1.639 | 1.806 | 0.655 | 0.632 | 1.194 | 0.863 | 0.563 | 1.191 | 1.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10992
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RIAKRFK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.064
|
0.023
|
0.089
|
0.267
|
0.283
|
0.433
|
0.043
|
0.757
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004328
|
1.000
|
2.000
|
Hsc_gene_11276.t1;Hsc_gene_11299.t1
|
— | — | — |
KAI1708761.1 serpentine type 7TM GPCR chemoreceptor str domain-containing protein [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019421+1-278+|IPR050920+4-277+
|
— |
PF10317+1-278+Serpentine_type_7TM_GPCR_chemoreceptor_Srd
|
— |
PTHR22945+4-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-323
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
37225.290
|
9.901
|
18.500
|
15.170
|
15.170
|
39.009
|
60.991
|
10.836
|
4.334
|
40.557
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
67.021
|
1.232
|
2.185
|
4.157
|
10.399
|
5.307
|
8.277
|
2.087
|
0.514
|
280.214
|
160.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.622
|
— |
1.291
|
— | — | — |
2.109
|
-8.437
|
— |
-4.427
|
— | — |
No JSON data available for plots.