Hg_chrom6_TN10mRNA_11662
Organism: Heterodera glycines Gene Locus: chr6:3346283-3354735 Feature type: polypeptideProtein Sequence
Length: 752
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 1.484 | 0.556 | 0.871 | 0.687 | 0.852 | 0.776 | 1.13 | 1.123 | 1.24 | 0.665 | 1.33 | 1.367 | 0.972 | 1.465 | 1.368 | 1.177 | 0.887 | 1.023 | 0.782 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10997
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
RRIEKTQLKGRKRSA
|
— | — | — | — |
1-19
|
0.790
|
0.528
|
7.000
|
7.000
|
0.104
|
0.070
|
0.003
|
0.199
|
0.205
|
0.285
|
0.245
|
0.002
|
0.826
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004330
|
1.000
|
2.000
|
Hsc_gene_11279.t1;Hsc_gene_11281.t1
|
Hsc_gene_11281.t1;Hsc_gene_11282.t1
|
— |
O77408.1 Octopamine receptor 1 [Lymnaea stagnalis]
|
KAF7633164.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.980|GO:0009987_0.931|GO:0065007_0.898|GO:0050789_0.887|GO:0050794_0.865|GO:0005575_0.827|GO:0110165_0.827|GO:0050896_0.823|GO:0023052_0.819|GO:0007154_0.813|GO:0051716_0.811|GO:0003674_0.797|GO:0007165_0.761|GO:0016020_0.704|GO:0005886_0.679|GO:0071944_0.679|GO:0007186_0.677|GO:0005488_0.660|GO:0038023_0.626|GO:0060089_0.626|GO:0004888_0.620|GO:0032501_0.574|GO:0023051_0.570|GO:0010646_0.565|GO:0005622_0.562|GO:0051179_0.545|GO:0006810_0.522|GO:0051234_0.522|GO:0048583_0.509
|
IPR000276+67-91_76-728_82-209_100-121_146-168_152-168_182-203_276-713_286-309_650-674_695-721+|IPR017452+82-713+
|
SM01381+76-728+
|
PF00001+82-209_276-713+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24247+65-733+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
324-628
|
2.000
|
1-323;629-752
|
8zmf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.903
|
83627.680
|
10.002
|
41.500
|
21.011
|
11.170
|
47.473
|
52.527
|
13.830
|
7.181
|
53.324
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
381.451
|
203.049
|
485.709
|
241.686
|
98.057
|
174.799
|
294.730
|
298.062
|
95.225
|
923.894
|
568.750
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.029
|
— |
-0.898
|
-1.333
|
0.848
|
0.763
|
0.670
|
— |
-3.382
|
— | — | — | — |