Hg_chrom6_TN10mRNA_11663
Organism: Heterodera glycines Gene Locus: chr6:3363200-3364768 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.409 | 1.233 | 1.24 | 0.522 | 0.631 | 1.166 | 0.902 | 0.758 | 1.347 | 2.15 | 1.033 | 1.337 | 0.421 | 0.874 | 0.928 | 0.758 | 0.497 | 0.803 | 0.583 | 0.223 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10998
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.936
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.515
|
0.281
|
0.070
|
0.564
|
0.063
|
0.132
|
0.162
|
0.079
|
0.057
|
0.348
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000896
|
1.000
|
5.000
|
Hsc_gene_1294.t1;Hsc_gene_1294.t2;Hsc_gene_1294.t3;Hsc_gene_26520.t1;Hsc_gene_7831.t1
|
— | — |
Q12013.1 Probable palmitoyltransferase AKR2 [Saccharomyces cerevisiae S288C]
|
CAB4007991.1 phosphatase 1 regulatory subunit 27-like [Paramuricea clavata]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.810|GO:0110165_0.797|GO:0008150_0.746|GO:0016020_0.689|GO:0005622_0.656|GO:0009987_0.654|GO:0043226_0.582|GO:0003674_0.536|GO:0043229_0.535|GO:0005737_0.520|GO:0065007_0.517|GO:0043227_0.506
|
IPR002110+9-38_12-41_14-101_44-68_44-74_78-107+|IPR036770+3-129_9-115+
|
SM00248+9-38_44-74_78-107+
|
PF12796+14-101+Ankyrin_repeats_(3_copies)
|
— |
PTHR24203+12-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-132
|
5mbl_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
14155.470
|
7.860
|
2.000
|
23.485
|
4.545
|
41.667
|
58.333
|
12.879
|
10.606
|
51.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
38.133
|
9.248
|
14.072
|
36.596
|
69.417
|
43.894
|
59.441
|
36.993
|
0.000
|
65.708
|
37.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.847
|
1.498
|
0.890
|
-0.646
|
0.448
|
— |
0.830
|
-6.849
|
6.051
|
— | — | — |
No JSON data available for plots.