SCN Proteipedia

Hg_chrom6_TN10mRNA_11679

Organism: Heterodera glycines Gene Locus: chr6:3434810-3439364 Feature type: polypeptide

Protein Sequence

Length: 369

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.851	1.513	0.443	0.934	0.994	1.042	0.742	1.22	1.506	1.282	0.903	1.435	1.204	0.834	0.774	1.278	1.066	0.985	0.625	0.717	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11013	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.599	0.188	0.023	0.510	0.163	0.215	0.121	0.009	0.160	0.086

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010291	1.000	1.000	Hsc_gene_11290.t1	Hsc_gene_11290.t1	—	—	KAI1705660.1 WD repeat-containing protein 54 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.943\|GO:0005575_0.913\|GO:0110165_0.904\|GO:0009987_0.883\|GO:0003674_0.845\|GO:0016020_0.830\|GO:0065007_0.825\|GO:0005622_0.822\|GO:0050789_0.817\|GO:0050794_0.793\|GO:0050896_0.791\|GO:0005488_0.774\|GO:0043226_0.772\|GO:0043229_0.763\|GO:0051716_0.757\|GO:0051179_0.750\|GO:0051234_0.741\|GO:0071840_0.739\|GO:0006810_0.737\|GO:0016043_0.737\|GO:0005515_0.734\|GO:0043227_0.734\|GO:0007154_0.732\|GO:0023052_0.726\|GO:0043231_0.722\|GO:0048519_0.719\|GO:0007165_0.713\|GO:0048523_0.708\|GO:0023051_0.700\|GO:0006996_0.697\|GO:0010646_0.697\|GO:0048583_0.697\|GO:0032879_0.696\|GO:0009966_0.691\|GO:0051049_0.688\|GO:0007166_0.687\|GO:0061024_0.687\|GO:0051128_0.686\|GO:0035556_0.685\|GO:1902531_0.685\|GO:0016192_0.683\|GO:0141124_0.683\|GO:0016050_0.679\|GO:0098657_0.678\|GO:0051051_0.677\|GO:0000165_0.676\|GO:0043408_0.676\|GO:0006900_0.675\|GO:0051129_0.675\|GO:0006897_0.674\|GO:0007167_0.674\|GO:0010324_0.674\|GO:0060627_0.674\|GO:0002090_0.670\|GO:0002091_0.670\|GO:0006898_0.670\|GO:0007169_0.670\|GO:0007173_0.670\|GO:0030100_0.670\|GO:0031623_0.670\|GO:0038127_0.670\|GO:0042058_0.670\|GO:0045806_0.670\|GO:0048259_0.670\|GO:0048261_0.670\|GO:1901184_0.670\|GO:0042802_0.668\|GO:0046983_0.657\|GO:0042803_0.656\|GO:0031982_0.583	IPR001680+168-207_249-288_256-297+\|IPR015943+23-227_228-346+\|IPR036322+88-340+\|IPR049546+2-332+\|IPR050630+140-341+	SM00320+168-207_249-288+	PF21031+2-332+WDR54	—	PTHR13720+140-341+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	342-369	1.000	1-341	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.866	40643.740	8.330	9.500	20.596	10.027	46.612	53.388	12.195	8.401	51.491

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	171.340	103.690	331.396	108.508	33.688	23.851	53.135	147.510	335.497	197.324	256.541

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.448	—	-1.502	-1.715	—	1.164	2.527	-1.334	—	—	—	—	—

No JSON data available for plots.

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