Hg_chrom6_TN10mRNA_11680
Organism: Heterodera glycines Gene Locus: chr6:3440606-3449513 Feature type: polypeptideProtein Sequence
Length: 1,009
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.014 | 1.222 | 0.793 | 0.615 | 1.041 | 1.525 | 0.673 | 1.437 | 0.705 | 1.313 | 1.051 | 1.224 | 0.716 | 1.048 | 1.254 | 1.345 | 1.137 | 0.721 | 0.686 | 0.321 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11014
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKDVKSNKNWWTIDKKNAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.124
|
0.009
|
0.573
|
0.102
|
0.188
|
0.171
|
0.102
|
0.314
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004334
|
1.000
|
2.000
|
Hsc_gene_11289.t1;Hsc_gene_11289.t2
|
— | — |
E7F187.3 LisH domain-containing protein ARMC9 [Danio rerio]
|
KAI1726945.1 lisH domain-containing protein ARMC9 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036064|GO:0060271
|
GO:0005575_0.942|GO:0110165_0.941|GO:0016020_0.858|GO:0043226_0.832|GO:0043227_0.773|GO:0071944_0.761|GO:0005886_0.727|GO:0032991_0.641|GO:0008150_0.618|GO:0005622_0.603|GO:0098590_0.588|GO:0042995_0.584|GO:0120025_0.582|GO:0009987_0.574|GO:0065007_0.563|GO:0030990_0.552|GO:0005929_0.551|GO:0043229_0.545|GO:0050789_0.542|GO:0050794_0.529
|
IPR040369+107-1003+|IPR048959+481-587+
|
— |
PF21050+481-587+LisH_domain-containing_protein_ARMC9,_ARM_repeats
|
— |
PTHR14881+107-1003+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;75-288;576-658;710-1009
|
3.000
|
29-74;289-575;659-709
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
111160.610
|
9.628
|
39.500
|
26.561
|
7.433
|
54.113
|
45.887
|
15.956
|
10.605
|
52.329
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
405.670
|
701.298
|
454.054
|
251.631
|
95.582
|
43.301
|
96.966
|
106.179
|
45.718
|
1084.638
|
639.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.857
|
-1.616
|
-0.742
|
-1.428
|
-1.127
|
1.172
|
1.189
|
— |
-4.733
|
— | — | — | — |
No JSON data available for plots.