Hg_chrom6_TN10mRNA_11681
Organism: Heterodera glycines Gene Locus: chr6:3450897-3454029 Feature type: polypeptideProtein Sequence
Length: 358
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 0.844 | 1.168 | 0.289 | 3.212 | 1.289 | 0.499 | 0.419 | 0.745 | 0.755 | 1.693 | 1.807 | 0.698 | 0.967 | 2.052 | 0.599 | 0.504 | 0.635 | 0.0 | 0.493 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11015
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.593
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRVESDDAAKLQDYEDRRR,RRIQREEEDRELEERRKAE,RRKAEEERRKAEEEERKAKLEADRKKKEEEKKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.377
|
0.105
|
0.019
|
0.738
|
0.127
|
0.074
|
0.129
|
0.001
|
0.232
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010292
|
1.000
|
1.000
|
Hsc_gene_11288.t1
|
Hsc_gene_11288.t1
|
— |
Q27371.1 Troponin T [Caenorhabditis elegans]
|
KAI6214719.1 Troponin T, skeletal muscle [Aphelenchoides besseyi];KAI6235822.1 Troponin T, skeletal muscle [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005861|GO:0006937
|
GO:0005575_0.952|GO:0110165_0.951|GO:0005622_0.948|GO:0008150_0.931|GO:0043226_0.914|GO:0009987_0.907|GO:0043229_0.893|GO:0003674_0.892|GO:0005488_0.892|GO:0065007_0.892|GO:0050789_0.885|GO:0043228_0.882|GO:0043232_0.882|GO:0050794_0.863|GO:0005515_0.857|GO:0071840_0.837|GO:0032991_0.835|GO:0016043_0.823|GO:0005737_0.805|GO:0032502_0.795|GO:0048856_0.795|GO:0032501_0.794|GO:0050896_0.779|GO:0006996_0.778|GO:0051716_0.770|GO:0005856_0.759|GO:0048869_0.759|GO:0030154_0.755|GO:0007010_0.750|GO:0048468_0.748|GO:0044085_0.745|GO:0007154_0.738|GO:0023052_0.736|GO:0099080_0.731|GO:0022607_0.728|GO:0070925_0.718|GO:0007165_0.717|GO:0048513_0.716|GO:0051239_0.712|GO:0035556_0.701|GO:0009653_0.699|GO:0009888_0.699|GO:0008092_0.698|GO:0140694_0.697|GO:0003008_0.692|GO:0030029_0.692|GO:0097435_0.690|GO:0030036_0.689|GO:0099081_0.689|GO:0007015_0.687|GO:0099512_0.687|GO:0141124_0.686|GO:0061061_0.685|GO:0042592_0.682|GO:0048646_0.681|GO:0044057_0.680|GO:0003012_0.677|GO:0009887_0.677|GO:0019725_0.677|GO:0006936_0.676|GO:0007005_0.676|GO:0036094_0.676|GO:0043167_0.676|GO:0048878_0.676|GO:0003013_0.675|GO:0007517_0.675|GO:0031032_0.675|GO:0042692_0.675|GO:0006941_0.674|GO:0008015_0.674|GO:0010927_0.674|GO:0032989_0.674|GO:0051146_0.674|GO:0055082_0.674|GO:0090257_0.674|GO:0003015_0.670|GO:0006873_0.670|GO:0006874_0.670|GO:0006937_0.670|GO:0006942_0.670|GO:0007498_0.670|GO:0008016_0.670|GO:0010882_0.670|GO:0019722_0.670|GO:0030003_0.670|GO:0030239_0.670|GO:0045214_0.670|GO:0046716_0.670|GO:0048644_0.670|GO:0050801_0.670|GO:0055001_0.670|GO:0055002_0.670|GO:0055074_0.670|GO:0055080_0.670|GO:0055117_0.670|GO:0060047_0.670|GO:0060048_0.670|GO:0071689_0.670|GO:0098771_0.670|GO:1903522_0.670|GO:0043169_0.666|GO:0046872_0.663|GO:0005509_0.654|GO:0005523_0.650|GO:0015629_0.569|GO:0030016_0.562|GO:0043292_0.562|GO:0030017_0.557|GO:0005861_0.540|GO:0005865_0.540|GO:0036379_0.540
|
IPR001978+183-259+|IPR027707+4-271+|IPR038077+171-319_176-276+
|
— |
PF00992+183-259+Troponin
|
— |
PTHR11521+4-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-358
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
42204.000
|
4.839
|
-14.500
|
47.765
|
5.028
|
63.687
|
36.313
|
22.067
|
25.698
|
37.430
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
midnightblue
|
1203.172
|
546.058
|
1418.168
|
2294.544
|
980.185
|
327.201
|
161.564
|
1014.800
|
838.289
|
2106.717
|
1563.105
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.148
|
1.934
|
0.803
|
-1.258
|
-1.569
|
-1.009
|
1.530
|
-2.511
|
— | — | — | — | — |
No JSON data available for plots.