Hg_chrom6_TN10mRNA_11684
Organism: Heterodera glycines Gene Locus: chr6:3484966-3487319 Feature type: polypeptideProtein Sequence
Length: 329
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 1.343 | 0.995 | 0.943 | 0.76 | 1.403 | 1.122 | 0.456 | 0.946 | 0.904 | 0.967 | 1.43 | 2.026 | 1.169 | 0.868 | 1.303 | 0.797 | 0.829 | 1.169 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11018
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.625
|
0.116
|
0.030
|
0.567
|
0.162
|
0.086
|
0.035
|
0.038
|
0.068
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_11307.t1;Hsc_gene_11307.t2;Hsc_gene_11321.t1;Hsc_gene_18086.t1;Hsc_gene_7017.t1
|
— | — |
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.736|GO:0005575_0.694|GO:0110165_0.692|GO:0005622_0.611|GO:0005737_0.533
|
IPR001870+89-323+|IPR003877+156-322_157-319+|IPR013320+110-324+|IPR043136+100-329+|IPR044736+141-319+|IPR050618+30-323+
|
SM00449+156-322+
|
PF00622+157-319+SPRY_domain
|
— |
PTHR12864+30-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-112
|
1.000
|
113-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
36196.940
|
7.784
|
3.500
|
21.581
|
11.246
|
46.809
|
53.191
|
11.550
|
10.030
|
54.711
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
1007.957
|
12.756
|
69.564
|
75.795
|
114.854
|
158.122
|
642.896
|
59.839
|
0.000
|
3984.627
|
2276.930
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.217
|
2.436
|
— |
0.567
|
0.477
|
2.035
|
-1.510
|
3.570
|
-12.752
|
7.101
|
-4.597
|
— | — |
No JSON data available for plots.