Hg_chrom6_TN10mRNA_11691
Organism: Heterodera glycines Gene Locus: chr6:3517742-3523419 Feature type: polypeptideProtein Sequence
Length: 584
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.175 | 0.876 | 1.121 | 0.59 | 1.513 | 1.668 | 0.469 | 1.027 | 1.37 | 1.273 | 1.012 | 1.309 | 0.856 | 0.856 | 1.607 | 0.783 | 0.674 | 0.83 | 0.659 | 0.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11025
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRLTIRAREKMAKKRSE,RAREKMAKKRSEMVEKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.344
|
0.078
|
0.012
|
0.602
|
0.061
|
0.146
|
0.113
|
0.011
|
0.103
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003724
|
2.000
|
1.000
|
Hsc_gene_11312.t1
|
Hsc_gene_11312.t1
|
— |
Q28G12.1 Coiled-coil domain-containing protein 22 [Xenopus tropicalis]
|
KAI1705662.1 coiled-coil domain-containing protein 22 like protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008530+1-571+|IPR048348+237-544+|IPR048349+1-112+
|
— |
PF05667+237-544+CCDC22_protein_coiled-coil_region|PF21674+1-112+CCDC22_protein_N-terminal_domain
|
— |
PTHR15668+1-571+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
175-292
|
2.000
|
1-174;293-584
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
66059.350
|
6.771
|
2.000
|
31.849
|
6.849
|
51.712
|
48.288
|
16.610
|
15.240
|
45.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
599.903
|
487.440
|
509.113
|
547.921
|
641.067
|
695.599
|
753.608
|
607.978
|
396.048
|
736.515
|
590.601
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.167
|
— |
0.215
|
0.194
|
— | — |
-0.302
|
0.454
|
— | — | — | — | — |
No JSON data available for plots.