Hg_chrom6_TN10mRNA_11694
Organism: Heterodera glycines Gene Locus: chr6:3529619-3532301 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 1.514 | 0.93 | 1.123 | 0.814 | 1.252 | 0.886 | 1.395 | 1.654 | 0.849 | 1.163 | 0.684 | 2.132 | 0.716 | 0.38 | 0.93 | 0.991 | 0.881 | 0.894 | 1.026 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — | — |
0.771
|
0.379
|
0.000
|
— |
0.192
|
0.178
|
0.031
|
0.357
|
0.092
|
0.146
|
0.164
|
0.002
|
0.122
|
0.632
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010299
|
1.000
|
1.000
|
Hsc_gene_11309.t1
|
Hsc_gene_11309.t1
|
— |
Q9N9H4.1 Aspartic protease 2 [Necator americanus]
|
KAI1709455.1 eukaryotic aspartyl protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.810|GO:0110165_0.810|GO:0008150_0.745|GO:0003674_0.636|GO:0005622_0.580|GO:0016020_0.576|GO:0005737_0.542|GO:0003824_0.540
|
IPR001461+13-427_79-99_267-280_318-329_400-415+|IPR001969+318-329+|IPR021109+23-272_65-427_275-425+|IPR033121+72-424_73-424+|IPR034164+73-423+
|
— |
PF00026+72-424+Eukaryotic_aspartyl_protease
|
— |
PTHR47966+13-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
48127.720
|
7.037
|
4.000
|
22.326
|
15.116
|
46.279
|
53.721
|
12.326
|
10.000
|
50.698
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
343.800
|
2.276
|
5.265
|
4.583
|
3.082
|
2733.256
|
406.962
|
47.214
|
0.514
|
302.750
|
173.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
9.817
|
-2.737
|
-5.971
|
3.254
|
-6.405
|
— | — | — |
6.367
|