Hg_chrom6_TN10mRNA_11695
Organism: Heterodera glycines Gene Locus: chr6:3533402-3536383 Feature type: polypeptideProtein Sequence
Length: 472
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.724 | 0.539 | 1.096 | 0.918 | 1.086 | 1.085 | 1.907 | 1.742 | 1.059 | 1.027 | 0.623 | 1.412 | 0.326 | 0.908 | 1.15 | 0.764 | 0.899 | 1.141 | 0.748 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11029
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
38-59
|
0.987
|
— | — | — |
0.504
|
0.362
|
0.000
|
— |
0.212
|
0.278
|
0.041
|
0.261
|
0.267
|
0.100
|
0.185
|
0.021
|
0.201
|
0.897
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002301
|
1.000
|
3.000
|
Hsc_gene_11305.t1;Hsc_gene_11305.t2;Hsc_gene_11305.t3
|
Hsc_gene_11305.t1;Hsc_gene_11305.t2;Hsc_gene_11305.t3
|
— |
Q8VIF2.1 Serine protease 42 [Mus musculus]
|
XP_039314478.1 melanization protease 1 isoform X2 [Solenopsis invicta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.894|GO:0003674_0.785|GO:0005575_0.746|GO:0110165_0.746|GO:0003824_0.632|GO:0016787_0.589|GO:0140096_0.540|GO:0008233_0.536
|
IPR001254+221-461_222-439_222-466+|IPR009003+215-454+|IPR033116+412-423+|IPR043504+214-464+|IPR051333+215-466+
|
SM00020+221-461+
|
PF00089+222-439+Trypsin
|
— |
PTHR24260+215-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
52434.760
|
8.927
|
22.000
|
23.517
|
12.924
|
47.881
|
52.119
|
15.042
|
8.475
|
49.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
142.019
|
1.229
|
11.887
|
11.631
|
5.336
|
15.839
|
14.617
|
25.393
|
278.928
|
379.912
|
336.633
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.052
|
3.109
|
— |
-1.146
|
1.579
|
— | — | — | — | — |
-5.891
|
— | — |