Hg_chrom6_TN10mRNA_11696
Organism: Heterodera glycines Gene Locus: chr6:3542535-3543403 Feature type: polypeptideProtein Sequence
Length: 186
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.25 | 0.75 | 0.88 | 1.854 | 0.448 | 1.103 | 0.896 | 1.882 | 1.314 | 0.872 | 0.733 | 1.581 | 0.896 | 0.827 | 0.329 | 2.458 | 0.529 | 1.059 | 0.414 | 0.158 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11030
|
— | — |
2.333
|
3.000
|
4.000
|
1.000
|
1.000
|
2.000
|
3.000
|
2.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
11A06|AF500015.1#TN10pacbiomikado.Chromosome_6G972.2
|
11A06|AF5000151#TN10pacbiomikadoChromosome_6G9722
|
Hsc_gene_11262;Hsc_gene_11271
|
— | — |
24-Not_Clustered
|
0.556
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— | — | — |
14-35
|
0.996
|
1-25
|
0.994
|
1.000
|
0.000
|
0.000
|
0.474
|
0.219
|
0.029
|
0.359
|
0.070
|
0.120
|
0.102
|
0.063
|
0.226
|
0.313
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000083
|
13.000
|
3.000
|
Hsc_gene_1514.t1;Hsc_gene_1515.t1;Hsc_gene_1943.t1
|
Hsc_gene_11262.t1;Hsc_gene_11271.t1
|
— | — |
AAP30754.1 putative gland protein G11A06 [Heterodera glycines]
|
WP_271607015
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-186
|
1.000
|
1-148
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
19192.730
|
6.799
|
1.500
|
17.742
|
8.065
|
45.699
|
54.301
|
10.215
|
7.527
|
63.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
3279.936
|
4.452
|
27.805
|
129.859
|
2507.611
|
694.732
|
1323.133
|
110.911
|
33.391
|
12525.238
|
7171.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.413
|
4.732
|
2.337
|
4.239
|
-1.838
|
0.941
|
-2.759
|
3.722
|
-8.603
|
— | — | — | — |