Hg_chrom6_TN10mRNA_11698
Organism: Heterodera glycines Gene Locus: chr6:3550115-3552972 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.312 | 1.431 | 1.399 | 0.707 | 0.598 | 1.841 | 0.977 | 3.077 | 1.368 | 1.317 | 0.389 | 1.81 | 0.57 | 0.296 | 1.047 | 0.659 | 0.841 | 1.01 | 0.394 | 0.151 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11032
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.555
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.487
|
0.697
|
0.027
|
0.578
|
0.128
|
0.068
|
0.060
|
0.012
|
0.150
|
0.484
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010300
|
1.000
|
1.000
|
Hsc_gene_7015.t1
|
Hsc_gene_7015.t1
|
— | — |
KZS07266.1 putative Ankyrin repeat domain-containing protein 50 [Daphnia magna]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+23-56_75-145_85-114_85-117_118-147_118-150+|IPR036770+11-195_31-172+
|
SM00248+23-56_85-114_118-147+
|
PF12796+75-145+Ankyrin_repeats_(3_copies)
|
— |
PTHR24178+33-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-195
|
1.000
|
1-138
|
9jxq_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
21156.810
|
6.354
|
-1.000
|
25.128
|
9.231
|
48.205
|
51.795
|
13.846
|
11.282
|
53.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
19.915
|
5.903
|
13.874
|
23.881
|
15.423
|
12.754
|
40.850
|
4.974
|
1.542
|
41.851
|
24.576
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.003
|
1.880
|
0.898
|
-0.666
|
— |
1.688
|
-1.469
|
3.183
|
— |
3.976
|
— | — | — |
No JSON data available for plots.