Hg_chrom6_TN10mRNA_11701
Organism: Heterodera glycines Gene Locus: chr6:3568634-3573345 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 0.823 | 1.403 | 0.0 | 1.501 | 0.742 | 0.345 | 1.125 | 0.286 | 1.347 | 1.072 | 2.27 | 0.893 | 1.175 | 1.706 | 1.056 | 0.527 | 1.413 | 1.237 | 1.135 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11035
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKKDDGVAAEVRRKKKVY
|
— | — |
13-52
|
0.987
|
— | — |
0.000
|
— | — |
0.065
|
0.903
|
0.137
|
0.245
|
0.041
|
0.066
|
0.181
|
0.006
|
0.025
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001874
|
3.000
|
1.000
|
Hsc_gene_11324.t1
|
Hsc_gene_11324.t1
|
— |
Q9HD33.2 Large ribosomal subunit protein uL29m [Homo sapiens]
|
KAI1727440.1 mitochondrial 39-S ribosomal protein l47 (MRP-L47) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005761|GO:0006412
|
GO:0005575_0.903|GO:0110165_0.895|GO:0005622_0.850|GO:0016020_0.816|GO:0043226_0.803|GO:0043229_0.794|GO:0005737_0.766|GO:0043227_0.746|GO:0043231_0.723|GO:0005739_0.561
|
IPR010729+69-250_86-175+|IPR038340+78-184+
|
— |
PF06984+86-175+Mitochondrial_39-S_ribosomal_protein_L47_(MRP-L47)
|
— |
PTHR21183+69-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
285-311
|
1.000
|
1-284
|
6nu2_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
36209.180
|
6.409
|
-0.500
|
34.405
|
10.932
|
51.447
|
48.553
|
17.685
|
16.720
|
46.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
578.525
|
524.758
|
645.205
|
731.130
|
853.872
|
730.157
|
975.195
|
620.505
|
599.052
|
176.451
|
357.566
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.341
|
0.289
|
0.192
|
-0.211
|
0.429
|
-0.341
|
0.796
|
— | — | — | — | — |
No JSON data available for plots.