Hg_chrom6_TN10mRNA_11705
Organism: Heterodera glycines Gene Locus: chr6:3589627-3590262 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.023 | 1.488 | 1.164 | 0.552 | 0.533 | 0.821 | 0.571 | 0.8 | 0.889 | 0.432 | 1.455 | 1.412 | 1.333 | 2.0 | 1.143 | 0.457 | 1.18 | 1.576 | 1.231 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11039
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRIGYAFKTTKPKRI
|
— | — |
11-41
|
0.782
|
— | — |
0.000
|
— | — |
0.595
|
0.236
|
0.034
|
0.500
|
0.077
|
0.096
|
0.104
|
0.019
|
0.210
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000151
|
4.000
|
9.000
|
Hsc_gene_15400.t1;Hsc_gene_259.t1;Hsc_gene_5887.t1;Hsc_gene_5897.t1;Hsc_gene_5901.t1;Hsc_gene_5903.t1;Hsc_gene_5976.t1;Hsc_gene_8492.t1;Hsc_gene_8493.t1
|
— | — |
P53021.2 Major sperm protein 1 [Globodera rostochiensis]
|
ARR95827.1 major sperm protein [Heterodera schachtii];ARR95832.1 major sperm protein [Heterodera glycines];ARR95828.1 major sperm protein [Heterodera schachtii];ARR95829.1 major sperm protein [Heterodera schachtii];ARR95831.1 major sperm protein [Heterodera schachtii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.591|GO:0009987_0.524
|
IPR000535+8-124_9-110+|IPR008962+5-124+|IPR013783+2-125+|IPR051155+3-124+
|
— |
PF00635+9-110+MSP_(Major_sperm_protein)_domain
|
— |
PTHR22920+3-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-125
|
0.000
|
— |
1grw_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
13920.030
|
10.281
|
8.000
|
26.400
|
9.600
|
46.400
|
53.600
|
16.800
|
9.600
|
59.200
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
white
|
6.060
|
0.000
|
2.298
|
6.202
|
7.724
|
18.115
|
1.834
|
31.446
|
1.542
|
0.000
|
0.661
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.542
|
7.062
|
1.530
|
— |
1.241
|
-3.295
|
— |
-3.951
|
— | — | — | — | — |
No JSON data available for plots.