Hg_chrom6_TN10mRNA_11708
Organism: Heterodera glycines Gene Locus: chr6:3602291-3607728 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.007 | 1.002 | 0.679 | 1.214 | 1.363 | 0.703 | 0.886 | 1.356 | 1.463 | 0.865 | 2.2 | 1.969 | 0.946 | 1.366 | 0.394 | 0.742 | 0.716 | 1.514 | 0.926 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11042
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRMGIPVLCPKFTCRVEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.090
|
0.253
|
0.027
|
0.104
|
0.904
|
0.151
|
0.132
|
0.014
|
0.138
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010302
|
1.000
|
1.000
|
Hsc_gene_11330.t1
|
Hsc_gene_11330.t1
|
— |
P15123.1 Cytochrome P450 2C16 [Oryctolagus cuniculus]
|
KAI1719264.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.844|GO:0003674_0.666|GO:0009987_0.559|GO:0003824_0.550|GO:0008152_0.512|GO:0005575_0.510|GO:0110165_0.508
|
IPR001128+31-489_315-332_368-379_444-453_453-464+|IPR002401+60-79_84-105_179-197_304-321_324-350_367-385_408-432_443-453_453-476+|IPR036396+21-505_23-507+|IPR050182+9-484+
|
— |
PF00067+31-489+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000036+24-506+CYtochrome_P450_family
|
PTHR24300+9-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
59400.790
|
6.936
|
2.500
|
26.969
|
13.976
|
43.898
|
56.102
|
14.173
|
12.795
|
40.354
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
473.879
|
796.167
|
155.806
|
300.795
|
250.710
|
166.856
|
346.028
|
82.394
|
7.070
|
1280.884
|
734.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.584
|
-1.541
|
1.059
|
-0.295
|
-0.573
|
1.063
|
-1.137
|
2.218
|
-7.618
|
5.614
|
— | — | — |
No JSON data available for plots.