Hg_chrom6_TN10mRNA_11711
Organism: Heterodera glycines Gene Locus: chr6:3615909-3622857 Feature type: polypeptideProtein Sequence
Length: 769
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.452 | 0.875 | 0.807 | 1.495 | 1.834 | 0.619 | 1.43 | 1.243 | 0.931 | 0.828 | 1.453 | 1.228 | 1.125 | 0.955 | 0.91 | 0.981 | 0.847 | 0.8 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11045
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.410
|
0.273
|
0.010
|
0.613
|
0.206
|
0.156
|
0.237
|
0.094
|
0.107
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010303
|
1.000
|
1.000
|
Hsc_gene_11334.t1
|
Hsc_gene_11333.t1;Hsc_gene_11334.t1
|
— |
A2A3K4.1 Protein tyrosine phosphatase domain-containing protein 1 [Homo sapiens]
|
KAF7635268.1 TYR_PHOSPHATASE_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006470|GO:0016311
|
GO:0005575_0.852|GO:0110165_0.844|GO:0008150_0.828|GO:0016020_0.780|GO:0005622_0.777|GO:0043226_0.718|GO:0043227_0.676|GO:0009987_0.661|GO:0043229_0.599|GO:0065007_0.529|GO:0043231_0.523|GO:0003674_0.520|GO:0050789_0.520
|
IPR000387+233-300+|IPR003595+216-308+|IPR016130+253-263+|IPR020422+155-314+|IPR029021+150-311_154-315+|IPR050561+81-363+
|
SM00404+216-308+
|
PF22785+168-273+Polymorphic_toxin_system,_DSP-PTPase_phosphatase
|
G3DSA:3.90.190.10:FF:000157+162-319+Protein-tyrosine_phosphatase
|
PTHR23339+81-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-114;474-676
|
2.000
|
115-473;677-769
|
1ohd_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
87244.000
|
5.189
|
-17.000
|
26.788
|
10.533
|
52.536
|
47.464
|
13.004
|
13.784
|
48.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1845.923
|
142.508
|
406.750
|
125.347
|
40.498
|
35.711
|
48.661
|
246.381
|
104.071
|
7605.662
|
4390.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.283
|
-0.322
|
-1.588
|
-1.663
|
— | — |
2.687
|
-2.200
|
-6.330
|
— |
-7.086
|
— | — |
No JSON data available for plots.