Hg_chrom6_TN10mRNA_11712
Organism: Heterodera glycines Gene Locus: chr6:3623618-3627548 Feature type: polypeptideProtein Sequence
Length: 449
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.657 | 0.972 | 0.538 | 1.188 | 1.313 | 0.636 | 2.116 | 1.089 | 1.144 | 1.316 | 1.965 | 1.299 | 0.642 | 0.773 | 0.732 | 0.913 | 0.877 | 0.685 | 0.917 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11046
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRVK
|
— | — | — | — |
1-21
|
0.998
|
1.000
|
0.000
|
0.000
|
0.190
|
0.209
|
0.012
|
0.433
|
0.200
|
0.196
|
0.142
|
0.005
|
0.166
|
0.678
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002302
|
1.000
|
3.000
|
Hsc_gene_11335.t1;Hsc_gene_11335.t2;Hsc_gene_11335.t3
|
Hsc_gene_11335.t1;Hsc_gene_11335.t2;Hsc_gene_11335.t3
|
— |
Q9R0J8.1 Legumain [Rattus norvegicus]
|
AVA09646.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008233
|
GO:0005575_0.844|GO:0110165_0.844|GO:0003674_0.806|GO:0005622_0.729|GO:0016020_0.705|GO:0008150_0.694|GO:0003824_0.683|GO:0043226_0.675|GO:0043229_0.658|GO:0005737_0.654|GO:0009987_0.631|GO:0016787_0.631|GO:0043227_0.628|GO:0140096_0.623|GO:0043231_0.616|GO:0008233_0.602|GO:0004175_0.591|GO:0005773_0.520|GO:0004197_0.518|GO:0008234_0.518|GO:0071944_0.503
|
IPR001096+1-449_29-438_42-66_42-298_67-96_114-129_140-159_188-204+|IPR046427+323-446+|IPR048501+330-438_348-438+
|
— |
PF01650+42-298+Peptidase_C13_family|PF20985+348-438+Legumain,_prodomain
|
G3DSA:3.40.50.1460:FF:000006+36-317+Legumain
|
PTHR12000+29-438+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
285-372
|
2.000
|
1-284;373-449
|
4noj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
51364.430
|
7.601
|
9.500
|
29.176
|
12.918
|
52.116
|
47.884
|
16.704
|
12.472
|
45.657
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
4606.026
|
4.170
|
11.780
|
9.480
|
17.888
|
2402.657
|
37.254
|
49009.416
|
31.789
|
817.782
|
480.928
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.274
|
— | — |
0.886
|
7.080
|
-6.000
|
4.254
|
-10.219
|
-4.787
|
— |
-5.207
|
— | — |