Hg_chrom6_TN10mRNA_11713
Organism: Heterodera glycines Gene Locus: chr6:3628818-3629573 Feature type: polypeptideProtein Sequence
Length: 175
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.532 | 0.935 | 0.394 | 0.476 | 1.319 | 1.224 | 1.429 | 1.397 | 0.695 | 1.212 | 1.681 | 1.111 | 0.659 | 0.583 | 1.551 | 0.843 | 1.299 | 1.319 | 1.008 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11047
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
SGGGAKKEKKHKGSKS,KKSSDGASGGGAKKEKKHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.248
|
0.144
|
0.171
|
0.802
|
0.101
|
0.347
|
0.061
|
0.144
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_11336.t1
|
— |
P06566.1 Endoglucanase A [Evansella cellulosilytica DSM 2522]
|
AJE31858.1 beta-1,4-endoglucanase-1 precursor, partial [Heterodera cruciferae]
|
No
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000272|GO:0004553
|
— |
IPR001547+10-44+|IPR017853+12-101+
|
— |
PF00150+10-44+Cellulase_(glycosyl_hydrolase_family_5)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
147-175
|
1.000
|
1-146
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.929
|
18919.580
|
9.574
|
7.500
|
21.714
|
12.000
|
45.143
|
54.857
|
13.714
|
8.000
|
54.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
328.622
|
2.613
|
3.279
|
5.441
|
13.944
|
281.043
|
24.064
|
1414.701
|
21.170
|
767.434
|
447.607
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.329
|
4.343
|
-3.534
|
2.217
|
-5.728
|
-5.308
|
— |
-5.647
|
— | — |
No JSON data available for plots.