Hg_chrom6_TN10mRNA_11717
Organism: Heterodera glycines Gene Locus: chr6:3661396-3672744 Feature type: polypeptideProtein Sequence
Length: 1,432
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.056 | 1.478 | 0.813 | 0.674 | 0.71 | 2.202 | 1.064 | 2.339 | 0.822 | 0.934 | 0.497 | 1.314 | 0.97 | 1.074 | 0.926 | 1.227 | 0.881 | 0.751 | 0.322 | 0.76 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11051
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.401
|
0.040
|
0.003
|
0.222
|
0.213
|
0.257
|
0.337
|
0.020
|
0.509
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010305
|
1.000
|
1.000
|
Hsc_gene_18083.t1
|
Hsc_gene_18083.t1
|
— |
G5EFI7.1 Myelin regulatory factor homolog 1 [Caenorhabditis elegans]
|
KAI3419180.1 NDT80 / PhoG like DNA-binding [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003700|GO:0006355|GO:0016540
|
GO:0008150_0.851|GO:0009987_0.801|GO:0065007_0.791|GO:0050789_0.774|GO:0005575_0.773|GO:0110165_0.764|GO:0050794_0.762|GO:0032502_0.728|GO:0048856_0.727|GO:0032501_0.686|GO:0016020_0.672|GO:0030154_0.667|GO:0048869_0.667|GO:0007275_0.659|GO:0005622_0.649|GO:0048731_0.640|GO:0071840_0.631|GO:0016043_0.630|GO:0007399_0.625|GO:0048468_0.620|GO:0022008_0.617|GO:0071944_0.614|GO:0050793_0.601|GO:0043226_0.591|GO:0005886_0.576|GO:0043229_0.576|GO:0043227_0.548|GO:0005737_0.547|GO:0043231_0.530|GO:0003674_0.516
|
IPR008967+527-748+|IPR024061+469-751_580-749+|IPR025719+1242-1386+|IPR026932+871-905+|IPR030392+801-865_801-900+|IPR036388+788-924+|IPR051577+200-1386+
|
— |
PF05224+580-749+NDT80_/_PhoG_like_DNA-binding__family|PF13884+801-865+Chaperone_of_endosialidase|PF13887+871-905+Myelin_regulatory_factor_ICA_domain|PF13888+1242-1386+Myelin_gene_regulatory_factor_C-terminal_domain_2
|
— |
PTHR13029+200-1386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-535;655-700;1397-1432
|
2.000
|
536-654;701-1396
|
5yhu_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
155414.330
|
7.070
|
20.500
|
21.229
|
11.173
|
50.140
|
49.860
|
12.500
|
8.729
|
55.307
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
greenyellow
|
3272.351
|
3276.787
|
2052.576
|
5805.988
|
5017.299
|
2691.124
|
1223.084
|
1286.898
|
1857.357
|
4915.858
|
3605.072
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.903
|
0.688
|
1.608
|
-0.243
|
-0.882
|
-1.129
|
-1.174
|
— | — | — | — | — | — |
No JSON data available for plots.