Hg_chrom6_TN10mRNA_11719
Organism: Heterodera glycines Gene Locus: chr6:3682618-3689137 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.376 | 1.297 | 0.785 | 0.496 | 0.869 | 0.968 | 0.471 | 1.349 | 1.399 | 1.604 | 0.736 | 1.799 | 1.948 | 1.107 | 1.285 | 1.285 | 0.708 | 0.872 | 1.522 | 1.058 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11053
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.910
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKRRRHSHLKSPSRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.048
|
0.128
|
0.006
|
0.166
|
0.307
|
0.308
|
0.238
|
0.038
|
0.466
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004336
|
1.000
|
2.000
|
Hsc_gene_18079.t1;Hsc_gene_18079.t2
|
Hsc_gene_18079.t1;Hsc_gene_18079.t2
|
— |
Q22549.1 Innexin-10 [Caenorhabditis elegans]
|
KAI1714657.1 innexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.915|GO:0008150_0.763|GO:0009987_0.664|GO:0030054_0.647|GO:0016020_0.563|GO:0005911_0.529|GO:0070161_0.529|GO:0005886_0.526|GO:0071944_0.526|GO:0051179_0.523|GO:0065007_0.522|GO:0006810_0.514|GO:0051234_0.514|GO:0005921_0.509|GO:0050789_0.505
|
IPR000990+19-399_32-402_38-395_60-71_88-97_118-140_217-231_266-275_290-306+
|
— |
PF00876+38-395+Innexin
|
— |
PTHR11893+19-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
417-556
|
1.000
|
1-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
64868.040
|
9.012
|
16.500
|
23.381
|
15.288
|
46.043
|
53.957
|
13.849
|
9.532
|
43.345
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
769.704
|
2570.801
|
452.904
|
337.975
|
211.943
|
382.174
|
321.526
|
820.207
|
170.579
|
1327.947
|
831.932
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.735
|
-3.065
|
-0.313
|
-0.704
|
0.865
|
— |
1.001
|
-1.214
|
-3.092
|
— |
-2.387
|
— | — |
No JSON data available for plots.