Hg_chrom6_TN10mRNA_11722
Organism: Heterodera glycines Gene Locus: chr6:3695166-3698457 Feature type: polypeptideProtein Sequence
Length: 358
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 1.559 | 1.524 | 0.867 | 0.791 | 1.361 | 0.599 | 1.397 | 0.683 | 1.17 | 1.143 | 2.465 | 1.94 | 0.483 | 0.855 | 0.758 | 0.687 | 0.889 | 0.859 | 0.657 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11056
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKGNTNDYDRFDAKKLRW
|
— | — | — | — | — | — |
0.001
|
— | — |
0.483
|
0.244
|
0.015
|
0.539
|
0.102
|
0.168
|
0.077
|
0.010
|
0.284
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010308
|
1.000
|
1.000
|
Hsc_gene_18076.t1
|
Hsc_gene_18076.t1
|
— | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.938|GO:0009987_0.882|GO:0005575_0.880|GO:0110165_0.876|GO:0003674_0.870|GO:0005622_0.814|GO:0008152_0.814|GO:0065007_0.802|GO:0016020_0.788|GO:0050789_0.788|GO:0044237_0.783|GO:0050896_0.782|GO:0003824_0.778|GO:0050794_0.770|GO:0009058_0.767|GO:0005737_0.765|GO:0051716_0.756|GO:0043170_0.752|GO:0043226_0.751|GO:0044249_0.748|GO:0071840_0.737|GO:0043229_0.734|GO:0016043_0.733|GO:0009059_0.731|GO:0048518_0.726|GO:0007154_0.720|GO:0010467_0.718|GO:0019222_0.716|GO:0023052_0.716|GO:0048519_0.716|GO:0048522_0.716|GO:0043227_0.715|GO:0043231_0.715|GO:0031323_0.708|GO:0048523_0.708|GO:0007165_0.707|GO:0060255_0.707|GO:0009889_0.700|GO:0016787_0.699|GO:0031326_0.698|GO:0010556_0.696|GO:0010646_0.696|GO:0006996_0.695|GO:0010468_0.695|GO:0048583_0.695|GO:0023051_0.694|GO:0044085_0.691|GO:0009966_0.690|GO:0051128_0.687|GO:0007166_0.686|GO:0009892_0.686|GO:0010605_0.685|GO:0010647_0.684|GO:0023056_0.684|GO:0035556_0.684|GO:0031324_0.683|GO:0048584_0.682|GO:1902531_0.682|GO:0009890_0.680|GO:0009967_0.680|GO:0010558_0.680|GO:0031327_0.680|GO:0140096_0.680|GO:0048585_0.679|GO:0051130_0.679|GO:0009968_0.678|GO:0010648_0.678|GO:0023057_0.678|GO:0010629_0.677|GO:0006325_0.676|GO:0033043_0.676|GO:0044087_0.676|GO:0006338_0.675|GO:0040029_0.674|GO:0051276_0.674|GO:1902532_0.674|GO:0007224_0.670|GO:0008589_0.670|GO:0010638_0.670|GO:0031445_0.670|GO:0031453_0.670|GO:0031507_0.670|GO:0033044_0.670|GO:0035329_0.670|GO:0035330_0.670|GO:0035331_0.670|GO:0044089_0.670|GO:0045814_0.670|GO:0045880_0.670|GO:1902275_0.670|GO:1905269_0.670|GO:2001252_0.670|GO:0008233_0.665|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0032991_0.631|GO:0005829_0.621|GO:0005634_0.608|GO:0043228_0.601|GO:0043232_0.601|GO:0005694_0.548|GO:0000785_0.545|GO:0000792_0.540|GO:0005700_0.540
|
IPR000210+192-288_195-258_195-287+|IPR002083+45-179_47-158_50-179+|IPR008974+28-187+|IPR011333+194-317_195-286+
|
SM00061+47-158+|SM00225+192-288+
|
PF00651+195-287+BTB/POZ_domain|PF22486+50-179+MATH_domain
|
— |
PTHR47022+37-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
358-358
|
1.000
|
1-357
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
40749.320
|
6.494
|
0.000
|
27.654
|
13.128
|
49.162
|
50.838
|
14.525
|
13.128
|
49.162
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
110.333
|
161.536
|
182.905
|
78.660
|
51.278
|
121.514
|
194.663
|
249.241
|
32.553
|
68.369
|
53.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.175
|
-1.107
|
-0.650
|
1.260
|
0.690
|
0.934
|
— | — | — | — | — | — |
No JSON data available for plots.