Hg_chrom6_TN10mRNA_11726
Organism: Heterodera glycines Gene Locus: chr6:3706790-3709534 Feature type: polypeptideProtein Sequence
Length: 460
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 0.961 | 0.632 | 0.675 | 1.486 | 1.561 | 0.595 | 0.87 | 0.531 | 1.116 | 0.626 | 1.407 | 0.906 | 1.338 | 2.041 | 0.807 | 1.319 | 0.823 | 2.843 | 0.448 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11060
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RRNTRLLWWKGRTFRR,RRPNWTRWPPLWKRNNSRRCPRRRSAKWPMTAAWTHRRRLRQRRRRRPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.417
|
0.443
|
0.059
|
0.412
|
0.169
|
0.152
|
0.267
|
0.105
|
0.199
|
0.574
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_11354.t1;Hsc_gene_11355.t1;Hsc_gene_5314.t1;Hsc_gene_5382.t1;Hsc_gene_5383.t1
|
— |
Q22943.2 Platelet-activating factor acetylhydrolase homolog 2 [Caenorhabditis elegans]
|
KAI1730402.1 platelet-activating factor acetylhydrolase, isoform II domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.834|GO:0003674_0.744|GO:0005575_0.563|GO:0110165_0.563
|
IPR029058+41-346_45-200+
|
— |
PF03403+52-80_124-328+Platelet-activating_factor_acetylhydrolase,_isoform_II
|
— |
PTHR10272+52-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
75-118;212-263;314-370
|
4.000
|
1-74;119-211;264-313;371-460
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
53235.230
|
8.895
|
12.000
|
28.261
|
10.217
|
52.174
|
47.826
|
15.870
|
12.391
|
47.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
367.881
|
33.398
|
48.103
|
120.117
|
414.507
|
822.910
|
243.318
|
532.587
|
0.000
|
778.875
|
445.072
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.710
|
1.433
|
1.756
|
1.003
|
-1.748
|
-0.743
|
-0.984
|
-10.427
|
7.765
|
— | — | — |
No JSON data available for plots.