Hg_chrom6_TN10mRNA_11727
Organism: Heterodera glycines Gene Locus: chr6:3711625-3716215 Feature type: polypeptideProtein Sequence
Length: 570
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 0.979 | 0.829 | 0.907 | 0.731 | 1.08 | 0.752 | 1.404 | 1.715 | 0.972 | 0.797 | 2.27 | 1.949 | 1.012 | 1.11 | 0.627 | 0.748 | 1.09 | 1.35 | 1.238 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11061
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.452
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.521
|
0.000
|
2.000
|
— |
0.215
|
0.382
|
0.032
|
0.275
|
0.848
|
0.348
|
0.500
|
0.048
|
0.332
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010309
|
1.000
|
1.000
|
Hsc_gene_11356.t1
|
Hsc_gene_11356.t1;Hsc_gene_18074.t1
|
— |
P49109.2 Flavin-containing monooxygenase 5 [Cavia porcellus]
|
KAF7637110.1 Dimethylaniline monooxygenase [N-oxide-forming] [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004499|GO:0050660|GO:0050661
|
GO:0008150_0.857|GO:0009987_0.753|GO:0003674_0.713|GO:0008152_0.635|GO:0044237_0.612|GO:0003824_0.573|GO:0005575_0.564|GO:0110165_0.564|GO:0016020_0.541|GO:0044281_0.512
|
IPR000960+1-17_1-524_26-50_53-71_77-92_130-146_186-201_302-329_353-370_370-383+|IPR002257+85-97_194-204_224-243_262-273_391-410_410-421+|IPR020946+2-501+|IPR036188+1-210_1-363_252-475+|IPR050346+2-489+
|
— |
PF00743+2-501+Flavin-binding_monooxygenase-like
|
G3DSA:3.50.50.60:FF:000159+1-381+Dimethylaniline_monooxygenase_[N-oxide-forming]
|
PTHR23023+2-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-570
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
65331.060
|
8.592
|
18.000
|
22.456
|
15.789
|
39.825
|
60.175
|
13.509
|
8.947
|
46.140
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
262.987
|
78.838
|
56.204
|
40.247
|
177.399
|
231.130
|
205.941
|
58.302
|
2.764
|
830.472
|
475.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.716
|
-1.107
|
-0.373
|
2.105
|
0.398
|
— |
-2.104
|
1.966
|
-8.378
|
— | — | — |
-5.984
|