Hg_chrom6_TN10mRNA_11730
Organism: Heterodera glycines Gene Locus: chr6:3723765-3727405 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.926 | 1.273 | 0.905 | 0.6 | 0.912 | 0.893 | 1.066 | 1.493 | 1.437 | 1.412 | 1.018 | 1.171 | 1.244 | 1.005 | 0.965 | 0.711 | 0.897 | 0.791 | 0.383 | 0.805 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11064
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.301
|
0.478
|
0.115
|
0.550
|
0.136
|
0.215
|
0.100
|
0.424
|
0.104
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010311
|
1.000
|
1.000
|
Hsc_gene_18071.t1
|
Hsc_gene_18071.t1;Hsc_gene_26233.t1;Hsc_gene_301.t1
|
— |
Q7TNE1.2 Succinate--hydroxymethylglutarate CoA-transferase [Mus musculus]
|
KAH7715841.1 caiB/baiF CoA-transferase protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0003674_0.724|GO:0005575_0.640|GO:0008150_0.637|GO:0110165_0.633|GO:0003824_0.611|GO:0005622_0.552|GO:0016020_0.543
|
IPR003673+6-376+|IPR023606+4-400_6-394+|IPR044855+235-328+|IPR050483+3-400+
|
— |
PF02515+6-376+CoA-transferase_family_III
|
— |
PTHR48207+3-400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-402
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
44236.790
|
8.370
|
10.000
|
24.876
|
10.697
|
44.279
|
55.721
|
14.428
|
10.448
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
425.601
|
30.308
|
137.527
|
105.693
|
103.127
|
136.057
|
221.088
|
600.726
|
65.799
|
1312.205
|
778.031
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.953
|
1.665
|
-0.271
|
— |
0.415
|
0.710
|
2.029
|
-1.296
|
-4.453
|
— |
-3.470
|
— | — |
No JSON data available for plots.