Hg_chrom6_TN10mRNA_11737
Organism: Heterodera glycines Gene Locus: chr6:3748263-3751829 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.116 | 1.246 | 0.487 | 0.539 | 0.595 | 0.801 | 0.797 | 0.893 | 0.645 | 1.267 | 0.372 | 1.576 | 0.868 | 2.018 | 1.412 | 2.041 | 1.025 | 0.744 | 0.859 | 0.328 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11071
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.320
|
0.173
|
0.015
|
0.165
|
0.904
|
0.061
|
0.294
|
0.324
|
0.190
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010314
|
1.000
|
1.000
|
Hsc_gene_18066.t1
|
Hsc_gene_18066.t1
|
— |
Q9JJZ4.2 Ubiquitin-conjugating enzyme E2 J1 [Mus musculus]
|
KAI1712345.1 ubiquitin-conjugating enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.912|GO:0009987_0.687|GO:0008152_0.681|GO:0043170_0.681|GO:0003674_0.668|GO:0005575_0.656|GO:0110165_0.656|GO:0044238_0.655|GO:0019538_0.620|GO:0065007_0.612|GO:0016020_0.611|GO:0050789_0.600|GO:0050896_0.598|GO:0051716_0.581|GO:0050794_0.570|GO:0005622_0.517|GO:0003824_0.515|GO:0140096_0.515|GO:0016740_0.506|GO:0016746_0.506|GO:0016755_0.506|GO:0019787_0.506|GO:0004842_0.505|GO:0009056_0.505|GO:0009057_0.505
|
IPR000608+48-196_50-157_52-157+|IPR016135+39-200_50-188+|IPR050113+50-157+
|
SM00212+51-191+
|
PF00179+52-157+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000086+42-220+Ubiquitin-conjugating_enzyme_E2_J1
|
PTHR24067+50-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52;198-377
|
2.000
|
53-197;378-448
|
2f4w_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
47590.870
|
10.326
|
18.000
|
17.411
|
7.143
|
46.429
|
53.571
|
11.161
|
6.250
|
61.830
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
tan
|
1858.079
|
1160.389
|
1790.522
|
1399.515
|
1877.006
|
3108.209
|
2265.894
|
2121.021
|
2625.211
|
1014.229
|
1704.650
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.397
|
0.133
|
-0.247
|
0.392
|
0.742
|
-0.446
|
-0.660
|
— | — | — | — | — | — |
No JSON data available for plots.