Hg_chrom6_TN10mRNA_11738
Organism: Heterodera glycines Gene Locus: chr6:3752637-3757881 Feature type: polypeptideProtein Sequence
Length: 604
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.04 | 1.117 | 1.084 | 0.856 | 0.993 | 1.613 | 0.769 | 0.828 | 0.773 | 1.208 | 0.928 | 1.753 | 1.058 | 0.86 | 1.352 | 1.183 | 0.923 | 0.727 | 0.764 | 0.39 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11072
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRCQSQQQQRRERD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.433
|
0.140
|
0.020
|
0.547
|
0.062
|
0.110
|
0.136
|
0.088
|
0.152
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010315
|
1.000
|
1.000
|
Hsc_gene_18065.t2
|
Hsc_gene_18065.t1;Hsc_gene_18065.t2
|
— | — |
CAD2174273.1 unnamed protein product [Meloidogyne enterolobii]
|
WP_183761099
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013783+177-282+|IPR054090+181-282+
|
— |
PF22073+181-282+Cep192_domain_4
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60;397-461
|
2.000
|
61-396;462-604
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
66903.700
|
8.103
|
10.000
|
26.325
|
7.781
|
51.325
|
48.675
|
14.404
|
11.921
|
51.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkorange
|
394.125
|
278.493
|
288.377
|
450.090
|
695.557
|
531.153
|
1097.774
|
116.921
|
235.501
|
250.784
|
244.234
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.180
|
0.556
|
0.752
|
0.596
|
-0.374
|
1.058
|
-2.292
|
3.375
|
— | — | — | — | — |
No JSON data available for plots.