SCN Proteipedia

Hg_chrom6_TN10mRNA_11742

Organism: Heterodera glycines Gene Locus: chr6:3803281-3818745 Feature type: polypeptide

Protein Sequence

Length: 1,671

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.842	0.891	0.892	0.681	0.698	1.105	0.712	0.958	1.489	1.876	0.807	1.479	1.978	0.863	0.953	1.094	0.667	0.87	0.783	0.722	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11076	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.978

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	KRKL,RRRK,KRIKHNSGGQRRRIS	11-47	0.991	—	—	—	—	0.000	—	—	0.095	0.153	0.024	0.177	0.481	0.587	0.467	0.033	0.506	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002303	2.000	2.000	Hsc_gene_18057.t1;Hsc_gene_18058.t1	Hsc_gene_18057.t1;Hsc_gene_18058.t1	—	P34358.6 ABC transporter ced-7 [Caenorhabditis elegans]	KAI1721127.1 ABC transporter domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016020\|GO:0016887\|GO:0055085\|GO:0140359	GO:0008150_0.924\|GO:0005575_0.862\|GO:0110165_0.862\|GO:0016020_0.843\|GO:0009987_0.712\|GO:0071944_0.699\|GO:0005886_0.697\|GO:0006810_0.693\|GO:0051179_0.693\|GO:0051234_0.693\|GO:0043226_0.666\|GO:0005622_0.657\|GO:0065007_0.647\|GO:0043227_0.633\|GO:0043229_0.621\|GO:0043231_0.594\|GO:0005737_0.593\|GO:0050789_0.569\|GO:0005773_0.545\|GO:0003674_0.503	IPR003439+535-776_557-705_1352-1575_1368-1504+\|IPR003593+565-753_1376-1551+\|IPR013525+244-467_1093-1289+\|IPR017871+678-692+\|IPR026082+192-482+\|IPR027417+521-792_553-772_1340-1578_1351-1566+	SM00382+565-753_1376-1551+	PF00005+557-705_1368-1504+ABC_transporter\|PF12698+244-467_1093-1289+ABC-2_family_transporter_protein	G3DSA:3.40.50.300:FF:000933+523-782+ABC_transporter_A_family_member_7\|G3DSA:3.40.50.300:FF:001598+1340-1579+ABC_transporter_ced-7	PTHR19229+192-482+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1671	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.741	187337.780	8.344	31.000	21.005	12.507	40.874	59.126	11.909	9.096	45.901

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	1472.900	1221.248	1229.051	968.033	1022.339	1284.595	1529.466	1334.932	331.709	2974.031	1841.607

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.220	-0.472	-0.236	—	0.344	0.260	—	0.338	-3.296	—	—	—	—

No JSON data available for plots.

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