SCN Proteipedia

Hg_chrom6_TN10mRNA_11746

Organism: Heterodera glycines Gene Locus: chr6:3851378-3884637 Feature type: polypeptide

Protein Sequence

Length: 3,346

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.07	1.46	0.945	0.567	1.385	1.303	0.63	1.39	1.195	1.066	1.263	1.195	0.938	0.937	0.848	1.05	0.794	0.688	0.943	0.65	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11080	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKRP,RHRR,RKQQKQFKKAIRQPKK,KRQAVDEGLRKYRKHVK,RKAEKANKSANQKTKKE,KRKNERAKERRKERLMKKR,RKNERAKERRKERLMKKRN,KKEAEEKANKIANQKTKKM,KPANGKPKPANGQPKPANGKPKPANGQPKPANGKPKPANGQPKPANGKPKPANGQPKEFIEIKSKTEGSKTKPKLSGPQKQAVKDGKLKSVIKIVPK	—	—	—	—	—	—	0.000	—	—	0.335	0.323	0.018	0.498	0.203	0.136	0.128	0.011	0.140	0.118

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002305	2.000	2.000	Hsc_gene_18049.t1;Hsc_gene_23685.t1	—	—	P40818.1 Ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens]	KAI1708194.1 protein translocase subunit SecA 1 [Ditylenchus destructor]	No	-0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004843\|GO:0005515\|GO:0005524\|GO:0016020\|GO:0016579\|GO:0017038	GO:0008150_0.855\|GO:0005575_0.819\|GO:0110165_0.819\|GO:0003674_0.786\|GO:0016020_0.728\|GO:0005622_0.713\|GO:0009987_0.664\|GO:0008152_0.653\|GO:0043226_0.639\|GO:0003824_0.631\|GO:0043170_0.628\|GO:0043229_0.619\|GO:0044238_0.617\|GO:0065007_0.607\|GO:0016787_0.601\|GO:0140096_0.596\|GO:0050789_0.586\|GO:0008233_0.571\|GO:0043227_0.561\|GO:0019783_0.551\|GO:0101005_0.551\|GO:0043231_0.545\|GO:0019538_0.508\|GO:0050794_0.501	IPR001394+104-433+\|IPR011115+1412-1484+\|IPR011990+2046-2159_2063-2148+\|IPR014018+1231-1944+\|IPR018200+105-120_375-392+\|IPR019734+2065-2098+\|IPR027417+1160-1520_1266-1917_1767-1949_1780-1916+\|IPR028889+104-436+\|IPR038765+103-434+\|IPR050185+88-436+	—	PF00443+104-433+Ubiquitin_carboxyl-terminal_hydrolase\|PF07517+1412-1484+SecA_DEAD-like_domain	—	PTHR21646+88-436+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-90;430-623;1571-1624;2172-2304;2574-3216	5.000	91-429;624-1570;1625-2171;2305-2573;3217-3346	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.683	373772.440	6.735	12.500	28.781	9.594	52.331	47.669	15.272	13.509	49.223

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	974.649	725.921	745.255	905.053	1000.659	1058.605	1332.479	525.769	134.574	1803.005	1087.963

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.193	0.181	0.390	—	—	0.343	-1.120	1.486	-3.882	—	—	—	—

No JSON data available for plots.

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