Hg_chrom6_TN10mRNA_11749
Organism: Heterodera glycines Gene Locus: chr6:3903394-3905372 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.675 | 0.868 | 2.188 | 0.429 | 1.591 | 0.958 | 0.79 | 2.49 | 0.738 | 1.178 | 1.257 | 1.953 | 0.922 | 0.798 | 0.847 | 0.474 | 0.952 | 0.503 | 0.958 | 0.976 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.890
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.891
|
0.410
|
0.000
|
— |
0.256
|
0.264
|
0.047
|
0.260
|
0.908
|
0.286
|
0.345
|
0.015
|
0.179
|
0.322
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000426
|
7.000
|
1.000
|
Hsc_gene_17706.t1
|
— | — |
B5X4E0.1 Calumenin-B [Salmo salar]
|
AVA09679.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.783|GO:0110165_0.783|GO:0005622_0.704|GO:0016020_0.689|GO:0043226_0.666|GO:0008150_0.658|GO:0005737_0.650|GO:0043227_0.621|GO:0043229_0.621|GO:0071944_0.597|GO:0005886_0.585|GO:0003674_0.582|GO:0043231_0.582|GO:0005488_0.527
|
IPR002048+115-143_122-136_166-182_166-185_166-188_189-224_193-221_199-214+|IPR011992+79-234+|IPR018247+124-136_166-178_202-214+
|
SM00054+115-143_166-185_193-221+
|
PF13202+122-136_166-182_199-214+EF_hand
|
— |
PTHR10827+61-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-96;132-241
|
1.000
|
97-131
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
27742.700
|
4.615
|
-16.000
|
39.004
|
12.863
|
55.602
|
44.398
|
17.427
|
21.577
|
46.058
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
87.372
|
371.624
|
155.870
|
108.256
|
97.655
|
102.846
|
47.969
|
120.357
|
5.174
|
1.656
|
3.164
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.484
|
-1.917
|
-0.416
|
— | — |
-1.090
|
— |
-1.185
|
— |
4.635
|
5.238
|
— | — |