Hg_chrom6_TN10mRNA_11750
Organism: Heterodera glycines Gene Locus: chr6:3906236-3911547 Feature type: polypeptideProtein Sequence
Length: 531
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.964 | 1.095 | 0.788 | 0.714 | 1.067 | 0.869 | 0.785 | 1.036 | 1.088 | 1.196 | 1.17 | 1.551 | 1.465 | 1.014 | 0.807 | 0.834 | 1.019 | 1.227 | 0.29 | 0.886 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
39-59
|
0.888
|
— | — | — | — |
0.000
|
— | — |
0.110
|
0.884
|
0.030
|
0.187
|
0.015
|
0.028
|
0.022
|
0.004
|
0.088
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010318
|
1.000
|
1.000
|
Hsc_gene_18039.t1
|
Hsc_gene_18039.t1
|
— |
Q8H151.2 Malonate--CoA ligase [Arabidopsis thaliana]
|
KAI1709791.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.786|GO:0008150_0.764|GO:0003824_0.712|GO:0005575_0.711|GO:0110165_0.707|GO:0005622_0.625|GO:0005737_0.600|GO:0008152_0.598|GO:0009987_0.579|GO:0016020_0.510
|
IPR000873+49-376+|IPR020845+183-194+|IPR025110+439-511+|IPR042099+34-411+|IPR045851+413-522+
|
— |
PF00501+49-376+AMP-binding_enzyme|PF13193+439-511+AMP-binding_enzyme_C-terminal_domain
|
— |
PTHR43201+46-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-531
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
58735.750
|
8.257
|
10.500
|
24.482
|
10.734
|
44.633
|
55.367
|
13.748
|
10.734
|
51.412
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1855.341
|
79.883
|
1294.498
|
2612.771
|
4518.457
|
3605.011
|
4438.874
|
1211.135
|
609.617
|
999.668
|
832.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.789
|
4.893
|
1.121
|
0.758
|
-0.311
|
0.310
|
-1.679
|
2.017
|
— | — | — | — | — |
No JSON data available for plots.